Callithrix jacchus (white-tufted-ear marmoset): 100395529
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Entry
100395529 CDS
T03264
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage stimulation factor subunit 1-like
KO
K14406
cleavage stimulation factor subunit 1
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100395529
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjc03019
]
100395529
Messenger RNA biogenesis [BR:
cjc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
100395529
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
WD40_Gbeta
CSTF1_dimer
Beta-prop_WDR36-Utp21_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
EIF3I
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_DCAF12
WDR90_beta-prop_4th
Beta-prop_VPS8
Beta-prop_NUP159_NUP214
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_Aladin
Frtz
DUF3748
Motif
Other DBs
NCBI-GeneID:
100395529
NCBI-ProteinID:
XP_054101455
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Position
15:complement(14633502..14640970)
Genome browser
AA seq
434 aa
AA seq
DB search
MYRTKLGVKDCQQLYKLIISQLLYDSHVSIANGLINEIKPQSVCAPAEQLLHLIKLGMEN
DDTTVQYAIGRSDTVAPGKGIDLEFDAEVQTMSPEASEYETCYVTSHKGPCHVDTYSRDG
QLIATGSVDASIKILDTERILAKSAMPIEVMMNETAQQNMENRPVIRTLCDHVDEVTCLA
FHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPT
LRLYDINTFQCFVSCNPQDQYTDAICSVNYNSRANMYITGSKDGCIKLWDQSCDVSNRCI
TTFEKVHDGAEVWSAIFFKNSKYILSSGKDSVAKLWEKSMGRTLVRYTGTGLSGRQVHRT
QAVFAHTEDYVLLPDERTISLCCWDLRTAKRRNLLSLGHNNIVCCIVHSPTNPMFMTCSD
DFRARYWYRXSTTD
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgtacagaaccaaactgggcgtgaaggactgccagcagctctacaagctgataattagc
cagctgctgtatgacagccacgtcagcatcgccaatggcctgatcaatgaaatcaagcct
cagtctgtctgtgcacccgcggagcagctcctgcatctcatcaaactaggaatggaaaat
gatgacaccacagtgcagtatgcaattggtcgttcagatactgttgcccctggcaaagga
attgacctggaatttgatgcagaggtccagactatgtccccagaggcttctgagtatgaa
acatgctatgtcacatcacataagggaccatgccatgtagatacctatagtagagatgga
cagttaatagctactgggtctgttgatgcttcgataaagatacttgacacagagaggatc
ttagccaaaagtgccatgccaatagaggtcatgatgaatgagaccgcacaacaaaatatg
gaaaaccgcccagtgattcgaactctttgtgaccatgtggatgaagtcacatgcctcgct
ttccacccaacagaacagattctggcttctggttcaagggattatactcttaaattattt
gattattccaaaccatcagcaaaaagagccttcaaatacattcaggaagctgaaatgtta
cgctccatctcttttcatccttctggagactttatacttgttggaactcagcatcctact
cttcgtctatatgatatcaacacctttcaatgctttgtctcttgcaatcctcaagatcaa
tacactgatgctatatgttccgttaattacaattctagagccaatatgtatataactgga
agcaaggatggctgcatcaaattatgggatcaaagttgtgatgtttcaaatcgatgcatc
acaacttttgaaaaagtacatgatggggctgaagtttggtctgccatttttttcaaaaat
tctaaatacattctctcaagtggaaaagactctgtagctaaactttgggaaaaatcaatg
ggacgaacactggtcagatacacgggtacgggtctgagtggacgccaggtgcaccggaca
caggctgtgtttgcccacaccgaggactatgtgttgctgcccgatgagaggacgatcagt
ctctgctgctgggacttgaggacagccaagcggagaaacctgctttctttggggcacaac
aacattgtatgctgcatagtgcactcgcccaccaaccccatgttcatgacgtgcagcgat
gacttcagagcgcgatattggtaccggtgatccaccaccgactga
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