Callithrix jacchus (white-tufted-ear marmoset): 100395684
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Entry
100395684 CDS
T03264
Symbol
PABPC3
Name
(RefSeq) polyadenylate-binding protein 3
KO
K13126
polyadenylate-binding protein
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03015
mRNA surveillance pathway
cjc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100395684 (PABPC3)
09123 Folding, sorting and degradation
03018 RNA degradation
100395684 (PABPC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjc03019
]
100395684 (PABPC3)
03041 Spliceosome [BR:
cjc03041
]
100395684 (PABPC3)
Messenger RNA biogenesis [BR:
cjc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100395684 (PABPC3)
mRNA cycle factors
Stress granule specific factors
100395684 (PABPC3)
Spliceosome [BR:
cjc03041
]
Complex C
Other components
Complex C specific factors
100395684 (PABPC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
YflT
ATP-grasp_2
RRM_3
POP1_C
Motif
Other DBs
NCBI-GeneID:
100395684
NCBI-ProteinID:
XP_008996282
UniProt:
A0A5F4W614
LinkDB
All DBs
Position
5:140415155..140417586
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AA seq
636 aa
AA seq
DB search
MNPSTPSYPMTSLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMFTRRSSGYAYVNFQ
HPKDAERALDTMNFDVINGKSVRIMWSQRDPSLRKSGVGNIFVKNLDRSIGNKTLYDTVS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDQKVFVGRFKSRKERE
AELGARAKEFTNVYVKNFGEDMDDEHLKDLFGKFGPTLSVKVMTDERGKSKGFGFVSFER
REDAQKAVDELNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDKITRYQGLNLYVKY
LDDYIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGKIVAT
KPLYVALAQRKEERQAHLTNEHMHRTASVRAVPNPASKPYQPAPPSGYFMAALPQTQNSA
ACSPASQITQLRPSPRWTAPSVRPHPFQNMPGAIRPAAPRPPFSTMRPASSQVSRVMSTQ
CIANTSAQTVGPRPAAAAAAATPAVHTALRFKYAAGVRNPQQHFHAQPQVTMQQPAIHVQ
GQEALTVSMLVSAAPQQQKQMLGERLFPLIQARRPTLAGKITGMLLEMDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGFPTV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcacccccagctaccccatgacctcactctacgtgggggacctccacccc
gacgtgaccgaggcgatgctctacgagaagttcagcccggcgggacccatcctctccatc
cgggtctgcagggacatgttcacccgccgctcctccggctacgcctatgtgaacttccag
cacccgaaggacgcggagcgtgctctcgacaccatgaattttgatgttataaatggcaag
tcagtgcgcatcatgtggtctcagcgtgatccatcacttcgcaaaagtggagtgggcaac
atattcgttaaaaatctggacagatccattggtaataaaacactgtatgatactgtgtcc
gcttttggtaacatcctctcatgtaaggtggtctgtgatgaaaacggttccaagggctac
ggatttgtgcactttgagacacaggaagcagctgaaagagctattgaaaaaatgaatgga
atgctcctaaacgatcaaaaagtatttgttgggcgatttaagtcccgtaaagaacgagaa
gctgaacttggagctagggcaaaagagttcaccaatgtttacgtcaagaattttggagaa
gacatggatgatgagcaccttaaggatctctttggcaagttcgggcccaccttaagtgtg
aaagtaatgactgacgaacgtggaaaatccaaaggatttggatttgtaagctttgaaagg
cgtgaagatgcacagaaagctgtggatgagttgaatggaaaggagctcagtggaaaacaa
atttacgttggtcgagctcagaaaaaagtggaacggcagacagaacttaagcgcaaattt
gaacagatgaagcaagataagatcactagataccagggtcttaatctttatgtgaaatat
cttgatgattatattgatgatgaacgtctccggaaagagttttctccatttggtacaatc
actagtgcaaaggttatgatggagggtggtcgcagcaaagggtttggtttcgtgtgtttc
tcctccccagaagaagccactaaagcagttacagaaatgaatggtaaaattgtggccaca
aagccattgtatgtcgctttagctcagcgcaaagaagagcgccaggcacacctcactaac
gagcatatgcacagaacggcaagtgtacgagctgtgcccaacccggcaagcaaaccctac
cagccagcacctccttcaggttacttcatggcagctctcccacagactcagaactctgct
gcatgctctcctgctagccaaattactcaactaagaccaagtcctcgctggactgctccg
agtgtcagacctcatccattccaaaatatgcctggtgctatccgcccagctgctcctaga
ccaccatttagtactatgagaccagcttcttcacaggtttcacgagtcatgtcaacacag
tgtattgctaacacatcagcacagacagtaggtccacgtcctgcagctgctgcagctgca
gctactcctgctgtccacaccgctctgcggtttaaatatgccgcgggagttcgcaatcct
cagcaacattttcatgcacagccacaagttacaatgcaacagcctgctattcatgtacaa
ggccaggaagctttgactgtttccatgttggtatctgctgctcctcaacagcaaaagcaa
atgttgggtgaacggctgtttcctctgattcaagccaggcgccctactcttgctggtaaa
atcactggcatgttgttggagatggataattcagaacttcttcatatgctcgagtctcca
gaatcactccgttctaaggttgacgaagctgtagctgtactacaagcccaccaagctaaa
gaggctgcccagaaagcagttaacagcgccactggttttccaactgtttaa
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