Callithrix jacchus (white-tufted-ear marmoset): 100396115
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Entry
100396115 CDS
T03264
Symbol
SOX17
Name
(RefSeq) transcription factor SOX-17
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
100396115 (SOX17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjc03000
]
100396115 (SOX17)
Transcription factors [BR:
cjc03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
100396115 (SOX17)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
100396115
NCBI-ProteinID:
XP_002758971
Ensembl:
ENSCJAG00000016710
UniProt:
F6W913
LinkDB
All DBs
Position
16:9276477..9283612
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AA seq
414 aa
AA seq
DB search
MSSPDAGYASDDQSQTRSALPAVMAGLGPCPWAESLSPIGDMKVKGEAPASSGAPAGSAG
RAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEE
AERLRVQHMQDHPNYKYRPRRRKQVKRLKRVEGGFLHGLAEPQAAALGPEGGRVAMDGLG
LPFPEQGFPAGPPLLPPHMGGHYRDCQGLGASPLDGYPLPTPDTSPLDGVDPDPAFFAAP
MPGDCPAAGAYSYAQVSDYAGPLEPPSGPMHPRLGPEPAGPSMPGLLAPPSALHMYYGAV
GSPGAGGGRGFQMQPQPQHQHQHQHHPPGPGQPSPPPEALPCRDGTDPSQPAELLGEVDR
TEFEQYLHFVCKPEMGLSYQGHDSSVTLPDSHGAISSVVSDASSAVYYCNYPDV
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcccggatgcgggatacgccagtgacgaccagagccagacccggagcgcgctg
cccgcggtgatggcggggctgggcccctgcccctgggccgagtcgctgagccccatcggg
gacatgaaggtgaagggcgaggcgccggcgagcagcggagctccggccgggtccgcgggc
cgagctaagggcgagtcccgtatccggcggccgatgaacgccttcatggtgtgggctaag
gacgagcgcaagcggctggcgcagcaaaaccccgacctgcacaacgccgagctgagcaag
atgctgggcaagtcgtggaaggcgctgacgctggcggagaagcggcccttcgtggaggag
gccgagcggctgcgcgtgcagcacatgcaggaccaccccaactacaagtaccggccgcgg
cggcgcaagcaggtgaagcgtctgaagcgggtggagggcggcttcctgcacggcctggcc
gagccgcaggcggcagcgctgggccccgagggcggccgcgtggcgatggacggcttgggc
ctcccgttccccgagcagggcttccctgctggcccgccgctgctgccccctcacatgggc
ggccactaccgcgactgccagggtctgggcgcgtccccgctcgacggctacccgttgccc
acgcccgacacgtccccgctggacggcgtggacccggacccggccttcttcgccgcccca
atgcccggggactgtccggcggccggcgcctacagctacgcgcaggtctcggactacgcg
gggcccctggagcctccctccggccccatgcacccccgactcggcccggaacccgcgggt
ccctcaatgccgggcctcctggcgccccccagcgccctacacatgtactacggcgcggtg
ggctcgcccggggcgggtgggggccgcggcttccagatgcagccgcagccgcagcaccag
caccagcaccagcaccaccccccgggccccgggcagccgtcgccccctccggaggcactg
ccctgccgggacggcacggaccccagccagcccgccgagctcctcggggaggtggaccgc
acggaatttgaacagtatctgcacttcgtgtgcaagcctgagatgggcctctcctaccag
gggcatgactctagtgtgactctccccgacagccacggggccatttcctccgtggtgtcc
gacgccagctccgccgtgtattactgcaactatcctgatgtgtga
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