Callithrix jacchus (white-tufted-ear marmoset): 100396321
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Entry
100396321 CDS
T03264
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X3
KO
K12821
pre-mRNA-processing factor 40
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100396321 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cjc03041
]
100396321 (PRPF40B)
Spliceosome [BR:
cjc03041
]
Complex A
U1 snRNP components
U1 related factors
100396321 (PRPF40B)
Complex B
100396321 (PRPF40B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
RhoGAP-FF1
WW_2
Motif
Other DBs
NCBI-GeneID:
100396321
NCBI-ProteinID:
XP_035112772
Ensembl:
ENSCJAG00000020982
LinkDB
All DBs
Position
9:complement(66373339..66451566)
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AA seq
905 aa
AA seq
DB search
MVGRFAKKEKTLRKGAVSTWSRQPDPTWTAGATCGRRKMPPPGIPPPFPPMGLPPLSQRP
PAIPPMPPGILPPMLPPMGAPPPLTQIPGMVPPMMPGMLMPAVPVTAATAPGADTASSAV
TGTGPPRALWSEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGK
PYYYNNQSKESRWTRPKDMDDLEVLVKQEAAGKQQQQLPQTLQPQPPQPQPDPPPVPPGP
TPVPTGLLEPEPGGSEDCDMSEATQPLEQGFLQQLEEGPSSSAVQHQPPQQEEEESKPEP
ERSGLSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNA
YKAQREKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELEVWAVVPERD
RKEVYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSF
AQDHQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHE
TGQLHSMSTWMELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDIL
KDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRM
RRREAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLEQT
ECQHLHTKGRKHGRKGKKHHHKRSHSPSGSESEEEELPPPSLRPPKRRRRNPSESGSEPS
SSLDSVESGGAALGGRGSPSSHLLGADHGLRKAKKPKKKTKKRRHKSNSPESETDPEEKA
GKESDEKEQEQDKDRELRQAELPNRSPGFGIKKEKTGWDTSESELSEGELERRRRTLLQQ
LDDHQ
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atggtgggccgctttgctaagaaggaaaagaccctgcgaaaaggagcggtgtctacttgg
tcccgtcagcccgaccccacctggactgctggggccacttgtggtcgccggaagatgccc
cctccagggatccccccaccctttcctccaatggggctaccccccttgagtcagagacca
ccagccatccccccaatgccacctggcatcctgcctccaatgcttccaccaatgggggcg
ccaccaccactcacacagataccaggaatggttcctccgatgatgccaggaatgctgatg
ccagcagtgcccgtcactgcagcgacggctccgggtgcggacaccgccagctctgctgta
actgggacaggtcctccgagggccctatggagtgagcatgtggccccagatgggcgcatc
tactactacaatgctgacgacaagcagtccgtgtgggagaagcccagcgtgctcaagtcc
aaggcagagctgctcctgtcgcaatgtccctggaaagagtacaagtcagacacagggaaa
ccttactactataacaatcagagtaaagagtctcgctggacccggcccaaggatatggat
gacctggaggttctagtcaagcaagaggctgcagggaaacagcagcagcagctgccacag
acacttcaaccacagccgcctcagccacagcctgaccccccacctgtacctccaggcccc
accccagtgcccacaggcctcctggaacctgagccaggtgggagtgaagattgtgatatg
tcagaggctacccagcccctggaacaggggttcctgcagcagctggaggagggccccagt
agttctgctgtacagcatcagccaccacagcaggaggaggaggaatcaaagccagaacca
gagaggtctggcctcagttggagcaaccgggagaaggcaaagcaggcattcaaggaactg
ctgagggacaaggctgtcccttccaatgcctcatgggaacaggccatgaagatggtggtc
actgacccccgttacagtgccttgcccaaactcagtgagaaaaagcaggcattcaatgcc
tacaaggcgcagcgggagaaggaggagaaggaggaggcccggctaagggccaaggaggcc
aagcagaccctgcagcatttcctggagcagcatgaacgcatgacctccaccacccgctac
cggcgggcagaacagacctttggggagctggaggtctgggctgtggtccctgagagggat
cgaaaagaggtttatgatgatgtcctcttcttcctggccaagaaggagaaggaacaggcc
aagcagctccggcgccgcaacatccaggccctaaagagcatcctggatgggatgagtagt
gtcaacttccaaaccacgtggtcccaggcccagcagtacctcatggataatcccagtttt
gctcaggaccatcagctgcagaacatggacaaggaagatgcactgatctgttttgaggag
cacatccgagctttggagagggaagaggaggaagaacgggagcgggcccggcttcgggag
cgacgccagcaacgcaagaatcgggaggccttccagaccttcctggatgagctgcatgag
acagggcagctacactctatgtctacctggatggagctgtatccagcagtcagcactgat
gtccgctttgccaacatgctgggccagccgggctccacccctctggacttgttcaagttc
tatgtggaggagttgaaggcacgattccatgatgaaaagaagatcattaaggacatcctt
aaggaccggggcttctgtgtggaggtgaacacggcctttgaggacttcgcccacgtcata
agctttgacaagagggctgccgcgctggacgcaggcaacatcaagctgaccttcaatagt
ctgctggagaaagcagaggcgcgggagagggagcgggagaaggaggaggcacgcaggatg
cggcgcagggaagctgcctttcgaagcatgctgaggcaggctgtgcctgctctggagcta
ggcactgcctgggaagaggtccgtgagcgttttgtgtgtgactcagcctttgagcagatc
accctggagtcggagaggatccggctcttccgggagttcctacaggtgctggagcagact
gaatgccagcacctccacaccaaaggccgaaagcacggcaggaaaggcaagaagcaccat
cacaagcgttcccactcaccctcgggctctgagtcggaagaagaggagctgcccccacca
tctctccggccacccaagcggagaaggcggaacccctcagagtcaggctctgagccctct
tcttcacttgattcagttgaaagtgggggtgctgcccttggaggacggggctccccttcc
tcccaccttcttggagcagatcatggccttcggaaagccaagaaaccaaaaaagaaaact
aagaagagaaggcacaagtcgaatagtcctgagagtgagacagaccccgaggagaaagct
ggcaaggagagcgatgagaaagaacaagaacaggacaaggacagggagctccggcaggca
gagctccctaaccgttccccaggctttggaatcaagaaggagaagacaggctgggacacg
tcggaaagtgagctgagtgagggtgagctggagaggcggcggcggacactcctacagcag
cttgatgatcaccagtga
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