Callithrix jacchus (white-tufted-ear marmoset): 100396588
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Entry
100396588 CDS
T03264
Symbol
SOX6
Name
(RefSeq) transcription factor SOX-6 isoform X13
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjc03000
]
100396588 (SOX6)
Transcription factors [BR:
cjc03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
100396588 (SOX6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
100396588
NCBI-ProteinID:
XP_009005974
Ensembl:
ENSCJAG00000009643
LinkDB
All DBs
Position
11:complement(78607512..79485206)
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AA seq
870 aa
AA seq
DB search
MPSSSEVLADVVRESRIEEWKSSHFIRMSSKQATSPFACAPDGEDAMTQDLTSREKEESS
DQHVASHLPLHPIMHNKPHSEELPTLVNTIQQDADWDSVLSSQQRMESENNKLCSLYSFR
NTSTSPHKPDEGSRDREIMTSVTFGTPERRKGSLADVVDTLKQKKLEEMTRTEQEDSSCM
EKLLSKDWKEKMERLNTSELLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAHDEQK
KLAASQIEKQRQQMDLARQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGHMPPLMIPIF
PHDQRTLAAAAAAQQGFLFPPGITYKPGDNYPVQFIPSTMAAAAASGLSPLQLQKGHVSH
PQINPRLKGLSDRFGRNLDTFEHGGGHSYNHKQIEQLYAAQLASMQVSPGAKMPSTPQPP
NTAGTVSPTGIKNEKRGTSPVTQVKDEAAAQPLNLSSRPKTAEPVKSPTSPTQNLFPASK
TSPVNPPNKSSIPSPIGGSLGRGSSLGKWKSQHQEETYELDILSSLNSPALFGDQDTVMK
AIQEARKMREQIQREQQQQQPHGVDGKLSSINNMGLNNCRNEKERSRFENLGPQLTGKSN
EDGKLGPGVIDLTRPEDAEGSKAMNGSAAKLQQYYCWPTGGATVAEARVYRDARGRASSE
PHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLS
KIHLEKYPNYKYKPRPKRTCIVDGKKLRIGEYKQLMRSRRQEMRQFFTVGQQPQIPITTG
TGVVYPGAITMATTTPSPQMTSDCSSTSASPEPSLPVIQSTYGMKTDAGSLAGNEMINGE
DEMEMYDDYEDDPKSDYSSENEAPEAVSAN
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgccctcaagttctgaagttctggctgatgtggtaagagaaagccggattgaagagtgg
aagagcagccacttcataagaatgtcttccaagcaagccacctctccatttgcctgtgca
cctgatggagaggatgcgatgacgcaggatttaacctcaagggaaaaggaagagagcagt
gatcaacatgtggcctcccatctgcctctgcaccccataatgcacaacaaacctcactct
gaggagctaccaacacttgtcaataccattcaacaagatgctgactgggacagcgttctg
tcatctcagcaaagaatggaatcagagaataataagttatgttccctatattccttccga
aatacctctacctcaccacataagcctgacgaagggagtcgggaccgcgagataatgacc
agtgttacttttggaaccccagaacgccgcaaagggagtcttgccgatgtggtggacaca
ctgaaacagaagaagcttgaggaaatgactcggactgaacaagaggattcctcctgcatg
gaaaaactactttcaaaagattggaaggaaaaaatggaaagactaaataccagtgaactc
cttggagaaattaaaggtacacctgagagcctggcagaaaaagaacggcaactctccacc
atgattacccagctgatcagtttacgggagcagcttctggcagctcatgatgaacagaaa
aaactggcagcctcacaaattgaaaaacaacggcagcaaatggaccttgctcgccaacag
caagaacagattgcaagacaacagcagcaacttctgcaacagcagcacaaaattaatctc
ctgcagcaacagatccagcaggttcagggtcacatgcctccgctcatgatcccaattttt
ccacatgaccagcggaccctggcagcagctgctgctgcccaacagggattcctcttcccc
cctggaataacatacaaaccaggtgataactaccctgtacagttcattccatcaacaatg
gcagctgctgctgcttctggactcagccctttacagctccagaagggtcatgtctcccac
ccacaaattaatccaaggctaaaaggcctaagtgaccgttttggcaggaatttggatacc
tttgaacatggtggtggccactcttacaaccacaaacagattgagcagctctatgccgct
cagctggccagcatgcaggtgtcacctggagcaaagatgccatcaactccacagccacca
aacacagcagggacggtctcacctactgggataaaaaatgaaaagagagggaccagccct
gtaactcaagttaaggatgaagcagcagcacagcctctgaatctctcatcccgacccaag
acagcagagcctgtaaagtccccaacgtctcccacccagaacctgttcccagccagcaaa
accagccctgtcaacccgccaaacaaaagcagcatccctagccccattggaggaagcctg
ggaagaggatcctctttaggtaaatggaaaagtcaacaccaggaagagacttacgaatta
gatatcctgtctagtctcaactcccctgccctgtttggggatcaggatacagtgatgaaa
gccatccaggaggcacggaagatgcgagagcagatccagcgggagcaacagcagcaacag
ccacatggtgttgatgggaaactgtcctccataaataatatggggctgaacaactgcagg
aatgaaaaggaaagatcacgctttgagaatttggggccccagttaacaggaaagtcaaat
gaagatggaaaactgggcccaggagtcattgatctcactcggccggaagatgcagaggga
agtaaagcaatgaatggctctgcagctaaacttcagcagtattattgttggccaacagga
ggtgccactgtggctgaagcacgagtctacagggatgcccgcggccgtgccagcagtgag
ccacacatcaagcgaccaatgaatgcattcatggtttgggcaaaggatgagaggaggaaa
atccttcaggccttccccgacatgcataactccaacattagcaaaatcttaggatctcgc
tggaaatccatgtccaaccaggagaagcaaccgtattatgaagagcaggcccggctaagc
aagatccacttagagaagtacccaaactataaatacaaaccccgaccgaaacgcacctgc
attgttgatggcaaaaagctccgaattggggagtataagcaactgatgaggtctcggaga
caggagatgaggcagttctttactgtggggcaacagcctcagattccaatcaccacagga
acaggtgtggtgtatcctggtgctatcacgatggcaactaccacaccatcacctcagatg
acatctgactgctctagcacctcggccagcccggagcccagcctcccggtcatccagagc
acttatggtatgaagacagatgccggaagcctagctggaaatgaaatgattaatggagag
gatgaaatggaaatgtatgatgactatgaagatgaccccaaatcagactatagcagtgaa
aatgaagccccggaggctgtcagtgccaactga
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