Callithrix jacchus (white-tufted-ear marmoset): 100397584
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Entry
100397584 CDS
T03264
Symbol
COL22A1
Name
(RefSeq) collagen alpha-1(XXII) chain
KO
K16630
collagen type XXII alpha
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100397584 (COL22A1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
100397584
NCBI-ProteinID:
XP_008981443
Ensembl:
ENSCJAG00000004235
UniProt:
F6XJM0
LinkDB
All DBs
Position
16:56953940..57285769
Genome browser
AA seq
1606 aa
AA seq
DB search
MAGLRGNAVAGLLWMMLLWSGGSGCQAQRAGCKSVHYDLVFLLDTSSSVGKEDFEKVRQW
VANLVDTFEVGPDRTRVGVVRYSDQPTTAFELGLFGSREEVKAAARRLAYHGGNTNTGDA
LRYITARSFSPHAGGRPGDRAYKQVAILLTDGRSQDLVLDAAAAAHRAGIRIFAVGVGEA
LKEELEEIASEPKSAHVFHVSDFNAIDKIRGKLRRRLCENVLCPSVRVEGDRFKHTNGGT
KEITGFDLMDLFSVKEILGKRENGAHSSYVRMGSFPVVQSTEDVFPQGLPDEYAFVTTFR
FRKTSRKEDWYIWQVIDQYGIPQVSIRLDGENKAVEYNAVGAMKDAVRVVFRGSRVNDLF
DRDWHKIALSIQAQNVSLYIDCALVQTLPIEERENIDIQGKTVIGKRLYDSVPIDFDLQR
IVIYCDSRHAELETCCDIPSGPCQVTVVTEPPPPPPPQRPPTPGSEQIGFLKTINCSCPA
GEKGEMGFAGPRGLPGPKGDIGATGPVGAPGPKGEKGDVGIGPFGQGQKGEKGSMGLPGP
PGRDGSKGMRGEPGELGEPGLPGEVGMRGPQGPPGLPGPPGHGGAPGLQGERGERGTRGE
KGERGLDGFPGKPGVAGQQGRPGPPGVAGPQGEKGDVGPAGPPGVPGSVVQREGLKGEQG
APGPRGHQGPPGPPGIPGPIGPEGRDGPPGLQGLRGKKGDVGPPGIPGLLGPQGPPGPPG
VPGPPGPGGSPGLPGEIGFPGKTGPPGPSGPPGKDGLNGPPGLPGSKGEPGERGEDGLPG
KPGLRGEVGEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGELGLPGLKGDRGDKG
EAGPAGPPGLPGTPSLFTPHPRMPGEQGPKGEKGDPGKPGEPGLQGRPGELGPRGPAGPP
GAKGQGGAHGTPGAAGNPGAPGHVGPPGPSGPPGSVGAPGLRGPPGKDGERGEKGAAGQE
GSPGPIGPRGDPGAPGFPGLPGKGKDGEPGLRGSPGLPGPLGTKGDRGVPGIPGSPGSRG
DPGIGVAGPPGPSGPPGDKGPPGSRGLPGFPGPQGPAGRDGAPGNPGERGPPGKPGLSSL
LSPGDINLLAKDVCNDCPPGPPGLPGLPGFKGDKGLPGKPGREGTEGKKGEAGPPGLPGP
PGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGSPGPPGADGISGAAGPPGIQGS
PGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEGARGPPGFKGH
TGDSGTPGPRGEPGAMGPPGQEGLPGKDGDTGPAGPQGPQGLRGPPGKNGSPGSPGEPGP
PGTPGQKGNRGEDGSPGLPGFLGPRGPPGEPGEKGVPGTEGSPGKPGEPGSKGERGDPGI
KGDKGPPGGKGQPGDPGIPGHKGHTGLMGPQGPPGENGPAGPPGPPGQPGFPGLRGESPS
METLRRLIQEELGKQLETKLAYLLAQMPPAHMKASQGRPGPPGPPGKDGLPGRTGPMGEP
GRPGQGGLEGPSGPIGPKGERGAKGDPGAPGLGLRGEMGPPGIPGQPGEPGYAKDGLPGI
PGPQGETGPAGHPGPPGPPGPPGQCDPSQCAYFASLAARPSNVKGP
NT seq
4821 nt
NT seq
+upstream
nt +downstream
nt
atggccggcctccgagggaatgctgtggctgggctcctctggatgatgctgctgtggagc
gggggcagtggctgccaggcccagcgggcaggttgcaaaagtgtccactacgatctggtc
ttcctcctggacacctcctccagcgtgggtaaggaggactttgagaaggtccggcagtgg
gtggccaatctggtggataccttcgaggtgggcccagaccgcacccgtgtgggggtcgtg
cgctacagcgaccaacccaccactgccttcgagttgggcctcttcggctcgcgggaggag
gtcaaggcagcagcccggcgcctcgcctaccatgggggcaacaccaacacgggtgacgcg
ctgcgctacatcacggcccgcagcttttccccgcacgccggtggccgccccggggaccgt
gcctacaagcaggtggccatcctactcaccgatggccgcagtcaagacctggtgctggat
gccgcggcggccgcccaccgcgctggcatacgcatattcgctgtgggcgtgggtgaggcg
ctcaaggaggagctggaggagatcgcctcggagcccaagtccgcccatgtcttccacgtg
tccgacttcaacgccattgacaagatccggggcaagctgcggcgccgcctatgcgaaaac
gtgctctgccctagtgttcgtgtagaaggagatcgctttaagcacaccaatggaggaacc
aaggaaatcacaggttttgacctgatggatttgttcagtgtgaaggaaatcttggggaag
agagagaacggagcacacagttcctatgtacggatgggatctttccctgtggtgcaaagt
actgaggatgtgttcccccaaggtttacctgatgagtacgcctttgtcacaaccttccgg
ttcaggaaaacatctcggaaggaagactggtatatctggcaggtcatcgaccagtatggc
atcccacaggtctccatcaggctagatggtgaaaataaggcagtggagtacaatgctgta
ggtgccatgaaagacgcggtcagggtggtcttccgaggctcccgggtcaatgacctcttc
gaccgggactggcacaagatcgccctgagcatccaggcccagaatgtctccctgtacatc
gactgtgcactggtgcagacgctgcccatcgaggagcgggagaacattgacatccagggg
aagactgtgattggaaaacgcctctacgacagtgtgcccattgattttgacctacagcgg
attgtgatctattgtgactcgagacatgcagaactggagacttgttgtgatatcccctcg
ggtccgtgccaggtgaccgtggtgacagagcctccacctccacccccaccccagcggcct
cccaccccgggcagtgaacagattgggtttttgaagaccatcaactgctcctgcccagct
ggagagaagggtgaaatgggatttgctggtcctagggggctccctggtccaaagggagac
ataggagccactgggccggtgggcgctcctggacctaagggagagaaaggcgatgtgggc
ataggaccttttggccaaggacaaaagggtgaaaagggttccatgggcctgcccggcccc
cctgggagagatggcagcaaaggcatgagaggggagccaggagagctgggagagccaggg
ctgccgggtgaggtcggcatgcgggggccccaaggaccacctggacttcctggacctcct
ggacatggcggagcacctggtctccaaggagaacgaggtgaaaggggaactcgaggagaa
aagggggagcgaggcctggatggattccccgggaagcctggggtggcaggacagcagggg
aggcctggccctcctggtgtggcaggaccccagggagagaagggtgatgtgggacctgcg
gggccgcctggggtaccaggctctgtggtgcagcgagagggcttgaaaggagaacaggga
gctccaggacccagaggtcaccaaggcccccctgggcctccaggcattcccggtccaata
ggcccagaaggcagggacggacctcctggtttgcaaggtctccgaggaaagaaaggtgac
gtgggaccacctggaatccctggattgctggggccgcagggccctccaggaccacctggt
gtcccaggccccccaggaccgggaggttctccgggtctgcctggagagatcggcttcccg
ggaaagactggtcctcctgggccctcgggaccccctggaaaggatgggctaaatggacca
ccaggcctgccaggaagcaagggagaaccaggagagagaggggaagacggtcttcctgga
aaaccaggccttcggggagaagttggggaacagggcctggcaggtcgacctggagagaag
ggagaagcaggcctcccaggggctccaggcttcccaggtgtgagaggagagaaaggagac
cagggagaaaaaggtgaactgggacttccaggactgaaaggtgaccgaggtgacaagggt
gaagctggtcctgcaggccctcccgggttacctggaactccatccctgttcacaccacac
cctcggatgcctggagaacaggggcccaaaggagagaagggcgatccaggcaagcctggg
gaaccgggactgcagggccgtcctggagaactggggcctcggggacccgctggacctccg
ggtgccaagggacagggaggcgcgcatgggactcctggagcagctggaaaccctggtgct
cctggacacgtaggtcccccaggtcccagcggccctccaggaagtgtgggtgctcctggc
ctcagaggcccccctggaaaagatggggagcgtggtgaaaagggagcagcggggcaagaa
ggaagcccaggacccattggtcccaggggagatcctggtgcccctggattccccggacta
cctggaaaagggaaggatggagagccgggactccgtggatcacctggacttcctggaccc
ctaggaaccaagggggaccgaggagtccctgggatccctggttctcctggcagccgtggc
gatccgggcattggggttgctggccctcctggtccttctggaccaccaggagacaaaggc
cccccgggatcacgaggcttaccgggattccctggcccccagggaccagccggccgagat
ggtgcaccaggaaatccgggagaaagagggcctcctggcaagccaggcctctcttcacta
ctgtctccaggggacataaatctcttggctaaggatgtgtgcaatgactgtccccctggc
cccccaggcctccctggtctaccaggttttaaaggggacaagggtctcccaggaaagcca
gggagagaaggcacagaaggaaaaaagggagaggctgggcctccaggcctaccagggccc
ccaggaatagccggaccacagggaagtcaaggagaacgtggtgcagatggtgaggttgga
cagaaaggtgatcagggtcatcctggagttccaggtttcatggggcccccagggagccct
gggccaccaggggcagatggaatttcaggagctgctggaccaccaggaatccaagggtca
cctgggaaagaaggccctcctggcccccaaggcccatctggattacctggaatcccaggg
gaagaaggcaaagagggcagagatggaaagccaggtccccctggggaaccgggcaaagca
ggagagccaggtctaccaggaccagagggtgcccgaggcccacctggcttcaagggacac
acaggtgattctggtacacctggtccccggggagagcctggtgccatggggcctcctggc
caggaagggttaccaggaaaagacggtgacactggacccgctgggccacagggtccccaa
ggactgaggggcccaccgggtaagaatggatcaccaggatctccaggagagcctggccct
ccaggaacccccggccagaaaggaaacagaggagaagatggcagcccaggacttcctggc
ttcctgggtccccgtgggcctccgggagaaccaggagagaaaggagtgccaggcacggag
gggtcccctgggaagcctggagagcctggatccaaaggagaaaggggagaccctgggatc
aaaggtgacaaagggcctcctggtggaaagggccagcccggggaccctggaattccaggc
cacaaaggccacacaggcctgatgggtccccaaggaccacctggggagaacggaccagct
gggcccccagggcctccaggccaaccaggatttccaggactgaggggggagtctccgtcc
atggaaaccctgcgtcgccttattcaagaagagctggggaagcagcttgaaaccaaactt
gcctacctcctggcccagatgcccccagcacacatgaaggcatctcaaggcagacctggg
cccccaggaccccctggaaaagatggacttccaggccggaccggccccatgggagagcca
ggtcgtcctgggcaggggggtctggaaggaccctctggacccataggtcccaaaggtgaa
cgaggagccaaaggtgacccaggtgcacctggacttggcctccgaggcgagatgggaccc
cctggaatcccaggtcaacctggagaacctggttatgctaaagatggacttcctgggatc
cctggccctcaaggggagacaggaccagctggacatcctggacccccaggaccccccggt
cctccaggccagtgtgacccttcccagtgtgcctactttgccagccttgctgcccggccg
agtaacgtgaagggtccctag
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