Callithrix jacchus (white-tufted-ear marmoset): 100397686
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Entry
100397686 CDS
T03264
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cjc03009
]
100397686 (PDCD11)
Ribosome biogenesis [BR:
cjc03009
]
Eukaryotic type
90S particles
Other 90S particles
100397686 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
HAT_Syf1_CNRKL1_N
Spt6_S1
HAT_PRP39_N
OB_RRP5_4th
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
Suf
TPR_14
OB_RRP5
TPR_19
ARM_TT21
ARM_TT21_N
UTP6_C
TPR_CcmH_CycH
DUF7017
TPR_2
DUF2110
TPR_12
TPR_1
ARM_TT21_5th
PPR
ARM_TT21_C
NRDE-2
Motif
Other DBs
NCBI-GeneID:
100397686
NCBI-ProteinID:
XP_009008466
Ensembl:
ENSCJAG00000018257
UniProt:
F6R7C7
LinkDB
All DBs
Position
12:93042152..93098056
Genome browser
AA seq
1870 aa
AA seq
DB search
MATLEESFPRGGTRKIHKPEKAFQQSIEQDNLFDISTEEGSTKRKKSQKVPAKTKKLKIE
KRESSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYT
KKLNEQVMQEQPLKDLFHLPELFSPGMLVRCVVSSLSITERGKKSVKLSLNPKNVNRVLS
AEVLKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIQQKNKGAKLKVGQYLN
CIIEEVKGSGGVVHLSIGHLEVSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPFGLTLNF
LTFFTGVVDFMHLDPKKAGTYFSNQAVKACILCVHPRTRVVRLSMRPIFLQPGRPLSRLS
CQHLGAVLTDVPVQGFFKKAGATFRLKDGVLAYARLSHLSDSKNVFNPEAFKPGNTHKCR
IIDYSQMDELALLSLRTSIIEAQYLRYHDIKPGAVVKGTVLTIKPYGMLVKVGEQMRGLV
PHMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLVMTLKKTLVESKLPAITCFADAK
PGLQTHGFIIRVKDYGCIVKFYSDVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNSE
PSKERMLLSFKLLRDPEPKKEPAGHNQKKEKAINVGQLVDVKVLEKTKDGLEVAVLPHNT
RAFLPTSHLSDHVTNGPLLHHWLQAGDTLHRVLCLSQSEGHVLLCRKPALVSTVEGGQDP
KNFSEIHPGMLLVGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSEHFVEGQTVV
AKVTNVDEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEELQGVRSLMSNRDSVLIQTL
AEMTPGMFLDLVVQKVLEDGSVVFSGGPVPNLVLRASRYHRGGQEVESGQKKKVVILNVD
LLKLEVLVSLHQDLVNRKAKKLRKGSEHQAVVQHLEKSFAIASLVETGHLVAFSLTSHLN
DTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRLTRKDSETVDEDEEVD
PALTVGTIKKHTFSIGDMVTGTVKSIKPTHVVVTLKDGIIGCIHASHILDDVPEGTSPTT
KLKVGKTVTARVIGGRDMKTFKFLPISHPRFVRTVPELSVRPSELEDGHTALNTHSVSPM
EKIKRYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVG
QALRATVVGPDSSKAFLRLSLIGPHKLEEGEVAMGRVVKVTPNEGLTISFPFGKIGTVSL
FHVSDSYSETPLEDFVPQKVVRCYILSTEDNVLTLSLRSSRTNPETKSKVEDPEINSIQD
IKEGQLLRGYVRSIQPHGVFFGLGPSVVGLARYPHVSQHSPSKKALYNKHLPKGKLLTAR
VLRLNHQKNLVELSFLPGDTGKPDVLSASLEVPLSEQEERKTGAEEKDQKGEKKNQKRNK
KNQKQLEEVELPSKEKQQPQKPQAQKWGRQEHQEPGSEQERVSKKPKKAGPSEEDDSLLD
VYYREGEEEGEETNMLSKEKQTKPAETPRLQLSSGFAWNVGLDSLTPALPPLAESSDSEE
DEKPHQATQKKKSKKERELQKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSI
LWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKV
FERAVQYNEPLKVFLHLADIYAKSEKFQEASELYNRMLKRFRQEKAVWIKYGAFLLRRSQ
AGASHCVLQRALECLPSTEHVDVIAKFAQLEFQLGDPERAKAIFENTLTTYPKRTDVWSV
YIDMTIKHGSQKDVRDIFERVIHLSLAPKKMKFFFKRYLDYEKQHGTEKDVQAVKAKALE
YVEAKSSVED
NT seq
5613 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgctggaagaaagcttcccccgagggggtacaagaaagatccacaaaccagag
aaagctttccagcagtcaattgaacaagacaacttatttgatatttctactgaagaggga
tccaccaaaaggaaaaagagccagaaggtgccagcaaaaacaaaaaagctgaaaatcgaa
aagagagaaagcagcaagtctgcaagagagaagtttgaaatccttagtgtcgagtccctg
tgtgagggaatgcggattttgggttgcgtgaaagaggtgaatgaactggaactggtgatt
agtctccccaatggcctccagggctttgtgcaagtcactgaaatctgtgatgcctatacc
aaaaagctgaacgagcaggtgatgcaagaacaacctctgaaggacttattccatttgcct
gaacttttctcacctggaatgctggtgagatgtgtggtgagcagtctgagcatcacagag
aggggcaagaagagtgtcaagctgtctctgaaccccaaaaatgtcaacagagtactgagt
gctgaggtcctgaagcctggcatgctacttacaggtactgtgtccagcctggaagatcat
ggctacctagtggacattggtgttgatgggaccagagcttttctgccactgctgaaagcc
caggagtacatccaacagaagaacaaaggtgctaaactaaaggtgggtcagtacctgaac
tgcatcattgaagaggtgaaaggcagcggaggagttgtgcatctctctattggtcacttg
gaggtttctactgccattgctactgaagagcagagctggacccttaataacttgctacca
ggactggtggtcaaagctcaggtacagaaggtgactccatttggtcttacgctaaacttc
ctcacattcttcacaggcgtggttgactttatgcacctggatcccaagaaagctggaaca
tacttctcaaatcaggcagtgaaggcctgcatcctctgtgtccatcctcgaaccagagtt
gtgcgcctgagcatgcgccctatcttcctgcagcctggacgtcctctctcccgactctct
tgccaacaccttggagcggtgctgactgatgttcctgtccaaggctttttcaaaaaggcc
ggggccacctttaggctgaaggatggggttctggcctatgcccggctcagccatctctct
gattctaagaacgtcttcaatcctgaggccttcaagccagggaacactcacaagtgtaga
attattgactacagccaaatggatgagctagccttgctctctctacgaacgtctattatt
gaagctcagtaccttaggtatcatgacatcaaacctggggcagtggtaaagggcacagta
ctaaccataaagccatatgggatgctggtgaaagtgggggagcagatgaggggactggta
cctcacatgcacctggctgacatcctgatgaagaatccagagaagaagtatcacatcggg
gatgaagtcaagtgccgggttttgctttgtgaccctgaagccaagaagctggtgatgacc
ctgaagaaaaccctggttgagtccaaactaccggccattacctgctttgctgatgccaag
cctggtctgcagacacatggcttcatcatcagggtcaaggactatggctgcattgtgaag
ttctacagtgatgtgcagggactggtgcccaagcatgagctcagtactgagtatatccct
gacccagagagagttttttacactggccaggtggtgaaggttgccgtgttgaatagtgag
ccatccaaagagaggatgctcttatccttcaagctgttgcgtgatccagaaccaaagaaa
gagcctgcaggacacaatcagaagaaagaaaaagccattaatgttgggcagttggtagat
gtgaaggttttagagaagaccaaagatgggctggaggtggctgtcctgccgcacaatacc
cgtgctttcctccccacgtctcatctgtcggaccacgttaccaacggcccactgttacat
cattggctccaggcaggtgacacccttcaccgagtcctgtgtctgagccagagcgaaggg
catgttcttctttgcaggaagccagctttggtctccacagtagaaggtggtcaggatccc
aagaacttctcagaaatccatcctggaatgttgctcgttggtttcgtgaagagcatcaag
gactatggcgtgttcatccagttcccctcaggtcttagtggactggccccaaaagctatc
atgagtgacaaatttgtgacctccacaagtgaacactttgttgagggtcagacagtggtg
gcaaaggtgaccaatgtggatgaggagaagcagcggatgctgctgtcgctgcggctgtca
gactgtggtctgggggacttagccaccaccagcctcctcctcctcagtcagtgcctggag
gagctgcagggcgtgcgcagcctcatgagcaaccgagactctgtgttgatccagacactg
gctgagatgaccccaggaatgttccttgacctagttgtgcagaaggtgttggaagatggc
tctgtggtattcagtgggggcccagtgcccaacctggtcctgagagccagcagataccat
cgtgggggacaggaggtggaatctgggcagaaaaagaaggttgtaatcttaaatgttgat
cttttgaagttggaagtgctcgtttcccttcaccaggacttagtgaatagaaaagctaaa
aagctgaggaaaggcagcgaacaccaggcagttgtgcagcacttggagaagtcctttgcc
attgcctccttggtagagactggccacctggtagctttctccctgacctctcacctcaac
gacaccttccgctttgactcagagaaattgcaggtgggacagggtgtctccctaaccctc
aagaccacagagccaggagtgactggccttcttttggctgtggaggggccagctgccaag
aggaccatgaggctgacccggaaggactctgagacagttgacgaggatgaagaagtggat
ccagctctgactgtggggaccataaagaagcacactttctccattggggacatggtcaca
gggactgtgaagtccattaagcccacgcatgtagttgtgactctgaaagatggcatcatt
ggctgtatccatgcctcccacattctagatgatgttccagagggcacctctcctactacc
aaactgaaggttgggaagacagtcactgcccgagtgattggcgggcgagacatgaagaca
ttcaagtttctcccaataagtcaccccagatttgttcgaaccgtcccggagctgagtgtt
cggccaagtgagctggaggatggccacactgctcttaacactcactctgttagccccatg
gagaagattaaacggtaccaggctggccagactgttacttgcttcttaaagaagtacaat
gtggtaaagaaatggcttgaggtggagattgccccagacatccgggggagaattccctta
ttgctcacttctctcagcttcaaggtgctgaagcatccagataagaagttccgggttggc
caggccctgagggccaccgttgttggcccagattcctccaaggccttcttacgcctctcc
ctcataggtccgcacaagcttgaggaaggggaagtggccatgggccgagtggtgaaggtg
acacccaatgaggggctgaccatctccttcccctttgggaagataggaacagtcagtcta
tttcacgtaagtgactcctactctgagacacccctggaagactttgtcccccagaaggtt
gtcagatgttacatcctgtccactgaagacaatgtattgactttgtcgctgcgatcatcc
agaacaaacccggagacaaaaagcaaagtagaagatccagagattaactccatccaggac
attaaggaagggcagcttctgagaggctacgtgaggtccatccagccacatggtgtgttc
tttggccttggcccctctgttgtgggtttggcccggtacccacatgtctcccagcacagc
ccatccaagaaagccctttataacaaacacctacctaaagggaagctgcttacagccagg
gtcttacgcctgaaccaccagaagaaccttgtagagctgtcattccttcctggagacact
gggaagccggatgtgctttctgcttccctggaagtgccactttcagagcaagaggagagg
aaaacaggggctgaggagaaagatcaaaaaggggaaaagaaaaatcagaaaaggaacaag
aagaaccagaagcagctggaggaggtggagctgcccagcaaggagaagcagcagccccag
aagccacaggcgcagaagtggggcaggcaggagcaccaggagcctgggagtgagcaggaa
agagtgagcaagaagccaaagaaagctggcccatcagaggaggacgacagccttctagac
gtgtactaccgggagggagaagaggagggggaagagacaaatatgctgtccaaggagaag
caaaccaagccagcagaaacgccccggctgcagctgtcttcaggcttcgcttggaacgtg
ggactagactctctgaccccggccttgccacctctagcggagagctcagatagcgaagag
gatgagaagccacaccaagccacgcagaaaaagaaaagcaagaaagaaagggagttgcag
aagcagaaggcagagaaggagctgtcccgcattgaggaggcactgatggatcctgggcgg
caaccggagtccgcagatgattttgatcgactggtgctcagctcccccaacagctcaatc
ctgtggctgcagtacatggctttccacctgcaggccacggagatcgagaaggcccgtgcc
gtggccgagagggcccttaagaccatctccttcagagaggagcaggagaaactgaatgtg
tgggtggctctgctgaacctggagaacatgtatggctctcaggagtccctgaccaaggtc
ttcgagcgggccgtgcagtacaatgagcctctcaaagtctttcttcacctggcagacatc
tacgccaagtcagagaaattccaggaagccagtgaactctacaaccggatgctgaagcgt
ttccggcaggagaaagctgtatggatcaaatacggcgccttccttctgcggaggagccag
gcgggggccagtcactgcgtgctgcagcgagcccttgagtgcctgcctagcacggagcac
gtggatgtcattgccaagtttgcccagcttgagtttcagctgggggacccagagcgggcc
aaagccatttttgagaacacgctgaccacctacccaaagcgcacagatgtctggtcagtc
tacatcgacatgaccatcaagcatggcagccagaaggatgtccgggacatctttgagcgg
gtcattcatctgagcttggcccccaagaaaatgaagttcttcttcaagcgctacctggac
tacgagaagcagcatggcaccgagaaggatgtgcaagcagtcaaggccaaggccctggag
tatgtggaggccaagagctcagtggaggactag
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integrated database retrieval system
