Callithrix jacchus (white-tufted-ear marmoset): 100398346
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Entry
100398346 CDS
T03264
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03440
Homologous recombination
cjc03450
Non-homologous end-joining
cjc04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100398346 (RAD50)
03450 Non-homologous end-joining
100398346 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
100398346 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cjc03032
]
100398346 (RAD50)
03400 DNA repair and recombination proteins [BR:
cjc03400
]
100398346 (RAD50)
DNA replication proteins [BR:
cjc03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
100398346 (RAD50)
DNA repair and recombination proteins [BR:
cjc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
100398346 (RAD50)
BRCA1-C complex
100398346 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
100398346 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
ABC_tran
DUF2703
AAA_29
Motif
Other DBs
NCBI-GeneID:
100398346
NCBI-ProteinID:
XP_035146773
Ensembl:
ENSCJAG00000033428
UniProt:
B0KWP2
LinkDB
All DBs
Position
2:complement(72606807..72704612)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG
TKGNTFVHDPKVAQETDVRAQIRLQFRDVNGELIAVQRSMICTQKSKKTEFKTLEGVITR
TKHGEKVSLSSKCAEIDREMISSLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQKFDEIF
SAARYIKALETLRQVRQTQGQKVKEYQMELKYLKQNKEKACEIRDQITSKEAQLTSSKEI
VKSYENELDPLKNRLKEIEHNLSKIMRLDNEIKALESRKKQMEKDNSELEQKMEKVFQGT
DEQLNDLYHNHQRTVREKERKLVDCQRELEKLNKESRLLNQEKSELLVEQGRLQLQADRH
QEHIRARDSLIQSLATQLELDGFERGPFSERQIKNFHKLVKERQERETKTANQLMNDFAE
KETLKQKQIDEIRDKKTGLGRIIELKSEILSKKQNELKNVKYELQQLEGSSDRILELDQE
LIKAERELSKAEKNSNVETLKMEVINLQNEKADIDRTLRKLDQEMEQLNHHTTTRTQMEM
LTKDKADKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKE
LASAEQNKNHINNELKRKEEQLSSYEDKLFDVCGSQDFDSDLDRLKEEIEKSSKQRAMLA
GATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEVISDLQSKLRLAPDKLKSTESELK
KKEKRRDEMLGLVPMRQSIIDLKEKEIPELRNKLQNVNRDIQRLKNDIEEQETLLGTIMP
EEESAKMCLTDVTIMERFQMELKDVERKIAQQAAKLQGIDLDRTVQQVNQEKQEKQHKLD
TVSSKIELNRKLIQDQQEQIQHLKSTTNELKSEKLQISTNLQRRQQLEEQTVELSTEVQS
LYREIKDAKEQVSPLETTLEKFQQEKEELINKKNTSNKIAQDKLNDIKEKVKNIHGYMKD
IENYIQDGKDDYKKQKETELNKVIAQLSECEKHKEKINEDMRIMRQDIDTQKIQERWLQD
NLTLRKRNEELKEVEEERKQHLKEMGQMQVLQMKNEHQKLEENIENIKRNHNLALGRQKG
YEEEIIHFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMLKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVEKFYRIKKNIDQCSEIVKCSVSSLGFNVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggatcgaaaagatgagcattctaggcgtgaggagttttggaattgaggacaaa
gataagcaaattatcactttcttcagtcctcttacaattttggttggaccgaatggggca
ggaaagacgaccatcattgaatgtctaaaatatatttgtactggagatttccctcctgga
accaaaggaaatacatttgttcatgatcccaaggttgctcaagaaacagatgtgagagcc
cagattcgtctgcaatttcgtgatgtcaatggagaacttatagctgtacaaagatctatg
atatgtactcagaaaagcaaaaagacagaatttaaaactctggaaggagtcattactaga
acaaagcatggtgaaaaggtcagtctaagctctaagtgtgcagaaattgaccgagaaatg
atcagttctcttggggtttccaaggctgtgctaaataatgtcattttctgtcatcaagaa
gattctaattggcctttaagtgaaggaaaggctttgaagcaaaagtttgatgagattttt
tcagcagcaagatacattaaagccttggaaacacttcggcaagtacgtcagacacaaggt
cagaaagtaaaggaatatcaaatggaactcaaatatctgaagcaaaataaggaaaaagct
tgtgagattcgtgatcagattacaagtaaggaagcccagttaacatcttcaaaggaaatt
gtcaaatcctatgagaatgaacttgatccattgaagaatcgtctaaaagaaattgaacat
aatctctctaaaataatgagacttgacaatgaaattaaagccttggagagccgaaagaag
caaatggagaaagataatagtgaactggaacagaaaatggaaaaggtttttcaagggact
gatgagcaactaaatgacttatatcacaatcaccagaggacagtaagggagaaagaaagg
aagttggtagactgtcagcgtgaactggaaaaattaaataaagaatctaggcttctcaat
caagaaaaatcagaactgcttgttgaacagggtcgtctacagctacaagcagatcgccat
caagaacatatccgagctagagattcattaattcagtctttggcaacacaactagaattg
gatggctttgaacgtggaccattcagtgaaagacagattaaaaactttcacaaacttgtg
aaagagagacaagaaagggaaacaaaaactgccaaccagctcatgaatgactttgcagaa
aaagagactctgaaacaaaaacagatagatgagataagagataagaaaactggactggga
agaataattgagttaaaatcagaaatcctaagtaagaagcagaacgagctaaaaaatgtg
aagtatgaattacagcagttggaaggatcttcagaccggattcttgaactggaccaggag
ctcataaaagctgaacgtgagttaagcaaggctgagaaaaacagcaatgtagaaactcta
aaaatggaagtaataaaccttcaaaatgaaaaagcagacatagacaggaccctgcgtaaa
cttgaccaggagatggagcagttaaaccatcatacaacaacacggacccagatggagatg
ctaaccaaagacaaagctgacaaagatgaacaaatcagaaaaataaaatcgaggcacagt
gatgaattaacctcactgctgggatattttcccaacaaaaaacagcttgaagactggctg
catagcaaatcaaaagaaattaatcagaccagggacagacttgccaagttgaacaaggaa
ctagcctcagctgagcagaataaaaatcatataaataatgaactaaaaaggaaggaagag
cagttgtccagttacgaagataagctgtttgatgtttgtggtagccaggattttgacagt
gatttagacaggcttaaagaggaaattgaaaaatcatcgaaacagcgagccatgctggct
ggagccacagcagtttactcccaattcattactcagctaacagatgaaaaccagtcatgt
tgtcccgtttgtcagagagtttttcagacagaggctgaattacaagaagtcatcagtgat
ttgcagtctaagctgcggcttgctccagataaacttaagtcaacagaatcagagctaaag
aaaaaggaaaagcggcgtgatgaaatgctgggacttgtgcccatgaggcaaagcataatt
gatttgaaggagaaggaaataccagaattaagaaacaaactgcagaatgtcaatagagac
atacagcgcctaaagaacgacatagaagaacaagaaacactcttgggtacaataatgcct
gaagaagaaagtgctaaaatgtgcctgacagatgttacaattatggagaggttccagatg
gaacttaaagatgttgaaagaaaaattgcacaacaagcagctaagctacaaggaatagac
ttagatcgaactgttcaacaagtaaaccaggaaaaacaagaaaaacaacacaagttagat
acagtttctagtaagattgaattgaatcgtaagcttatacaggaccagcaggaacagatt
cagcatctaaaaagtacaacaaatgagctaaaatctgagaaacttcagatatccactaat
ctgcaacgtcgtcagcaactggaggagcagactgtggaattatccactgaagttcagtct
ttatacagagagataaaggatgctaaagagcaggtaagccctttggaaacaacattggaa
aagttccagcaagaaaaagaagaattaatcaacaaaaaaaatacaagcaacaaaatagca
caggataaactgaatgatattaaagagaaggttaaaaatattcatggttatatgaaagac
attgaaaattatattcaagatgggaaagacgactataagaagcaaaaagaaactgaactt
aataaagtaatagctcagctaagtgaatgcgagaaacacaaagaaaagataaatgaagat
atgcgaatcatgagacaagatattgatacacagaagatacaagaaaggtggctacaggat
aaccttactttaagaaaaagaaatgaggaactaaaagaagtcgaagaagaaagaaaacaa
catttgaaggaaatgggtcaaatgcaggttttgcaaatgaaaaatgaacatcagaagttg
gaagagaacatagaaaatataaaaagaaatcacaacttggcattagggcgacagaaaggt
tatgaggaagaaattattcattttaagaaagaacttcgagaaccgcaatttcgggatgct
gaggaaaagtacagagaaatgatgattgttatgaggacaacagaacttgtgaacaaggat
ctggatatttattataagactcttgaccaagcaataatgaagtttcacagtatgaaaatg
gaagaaatcaataaaattattcgtgatctgtggcgaagtacctatcgtggacaagatatt
gaatacatagaaatacggtctgatgctgatgaaaatgtatcagcttctgataaaaggcgg
aattataactaccgagtggtgatgctgaagggagacacagccttggatatgcgaggacga
tgcagtgcgggacaaaaggtattagcctcactcatcattcgcctggccttggctgaaacg
ttttgcctcaactgtggcatcattgccttggatgagccaacaacaaatcttgaccgagaa
aacattgaatctcttgcacatgctctggttgagataataaaaagtcgctcacagcagcgt
aacttccagcttctggtaatcactcacgatgaagattttgtggagcttttaggacgttct
gaatatgtggagaaattctacaggattaaaaagaacatcgatcagtgctcagagattgtg
aaatgcagtgttagttccctgggatttaatgttcattaa
DBGET
integrated database retrieval system
