Callithrix jacchus (white-tufted-ear marmoset): 100398556
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Entry
100398556 CDS
T03264
Name
(RefSeq) LOW QUALITY PROTEIN: AFG3-like protein 1
KO
K08956
AFG3 family protein [EC:3.4.24.-]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc05017
Spinocerebellar ataxia
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
100398556
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cjc01002
]
100398556
09182 Protein families: genetic information processing
03110 Chaperones and folding catalysts [BR:
cjc03110
]
100398556
Peptidases and inhibitors [BR:
cjc01002
]
Metallo peptidases
Family M41: FtsH endopeptidase family
100398556
Chaperones and folding catalysts [BR:
cjc03110
]
Other chaperones and cochaperones
AAA proteases
100398556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M41
AAA
AAA_lid_3
AAA_5
AAA_22
AAA_16
TIP49
AAA_2
AAA_14
AAA_28
AAA_17
RuvB_N
nSTAND3
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
100398556
NCBI-ProteinID:
XP_054104560
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All DBs
Position
20:44241669..44275166
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AA seq
681 aa
AA seq
DB search
MLCRLLAAAGPLSLLWQCGGLGRCRTARTSVRALGTARQCLQRVHFQKPTLQARLTLFSR
WLCLKPKGGLARSREQSVRVIPAPGTSSEKYVWFNIGSVDTFEWNLESAXWKLGIEPHNQ
AAVVYTTESDGSFLRSLVPTLLLVGVLLYASRRGPMGAGPSGRGRGLFSVGETTARVLKS
NIDVRFADVAGCEEARLEIMEFVNFLKNPKQYQDLGAKIPKGATLTGPPGTGKTLLAKAA
AGEASVPFITVNGSEFLEMFVSVGPARVHDMFTMARKNAPCILFIDEIDAIGRKRGRGHF
GGQSEQENTLNQMPVEMDGFNSATNIVVLAGTNRPDILDPALIRPGRFDCQIYIGLPDIK
GRSSIFKVHLRPLKLHESLRKDTLVRKLAALTPGFTGADISIVCNEAALIAAWHLSPSVQ
EKHFEQAIERVIRGLEKKTQVLQPREKTTVAYHEAGQAVVGWFLEHADPLLKVSIITWGK
GLGSVQYLPRERHLFTREQLFDCMCMMLGGRVAEQLCFGQVTVGAQDDLRKVTQSTYAQI
VQFGMSEKLGQVSFNFPQQGKALVEKLYSEATAQLIDEEVRRLISAAYTCTLDLLTRCRE
HMEKVGQRLLEKEVLEKADLVELLGPWPFAEKSTYEEFVEGTGGLEEDISLPTGLKCWNR
GQEEGDVEQPVQGSSCSRWWS
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgttgtgccggctgctggcggcggccgggccactatccttgctgtggcaatgcggtggc
ctaggtcgctgcaggacggccaggaccagcgtgagagccctgggcacggcccgccagtgc
ctccagagggtccactttcagaagccgactctgcaggccagactgacgttattttcccgg
tggctctgtttgaaacccaaaggtggactggctagaagtcgtgaacaatctgtgcgtgtt
attcctgcccctgggacctcctctgagaagtacgtgtggtttaacatcggcagtgttgac
acctttgagtggaacctggagtctgcctagtggaagctggggatcgagccccacaaccag
gcggcggtggtctacaccactgagagcgatggctctttcttgcgaagcctggtgcccacg
cttctcctggttggagttctcctctatgcttccaggaggggcccgatgggagctggccct
agtggacgaggacggggcctcttcagcgtcggtgagacaacagccagggtcttaaagagc
aacatcgatgtgcggttcgcagacgtagctggttgcgaagaagccagattggaaattatg
gaatttgtgaatttcctgaagaatcccaagcagtatcaggacttaggagcaaaaattcca
aagggagccacgctcactggtcctcctggtacaggcaagacacttcttgccaaagcagct
gcaggggaggccagtgtgcccttcatcactgtgaatgggtcggagtttctggaaatgttt
gtcagtgttgggccagcaagggtgcatgatatgttcacaatggcccgaaaaaatgctccg
tgtatcttattcattgatgagattgatgcgattggcaggaagcgaggccgagggcacttt
ggaggccagagtgagcaggagaacaccttgaaccagatgccggtggagatggacgggttc
aactcagccaccaacattgtggtgctggccggcaccaaccgccctgacatcctggacccg
gccctgattcggcctggccggtttgactgccagatttacataggcctccctgacatcaaa
ggcaggtcctccatctttaaggtccacctgcgcccactgaagctgcatgagagcctcagg
aaggacaccctggtgaggaagctggcagcgctcaccccaggcttcactggtgctgatatt
tccattgtttgcaatgaggcagctctgattgccgcctggcatctgagtccttctgttcag
gagaagcactttgagcaggccatcgagagggtcatcagaggccttgagaagaagacccag
gtcctgcagcccagggaaaagacaactgtggcctaccacgaggccggacaggcggtggtg
ggctggttcctggagcacgcagaccccctgctgaaggtgtccatcatcacctggggcaag
gggctgggctctgtgcagtacttgccgagggagcggcacctctttaccagggagcagctc
ttcgattgcatgtgcatgatgctcgggggcagggtggctgagcagctgtgcttcgggcag
gtcactgtgggggctcaggatgacctgaggaaggtgacccagagcacctatgcccagatt
gtgcagtttgggatgagtgagaagctgggccaggtgtccttcaactttccccaacaaggc
aaggccctggtggagaagctgtacagcgaggcaactgcccagctcattgacgaggaggtc
cggcgcctcatcagcgccgcctacacgtgcaccctggacctgctgacacggtgccgggag
catatggagaaggtgggccagcggctcctggagaaggaagtgctggagaaggcagacctg
gtggagctgttgggcccttggcccttcgcggagaagtccacctacgaggagtttgtggag
ggcacgggtggcctggaggaggacatatcccttcccacggggctgaagtgctggaaccgg
ggacaggaggagggagacgtagagcagcctgtgcaggggagctcttgtagccgctggtgg
agctga
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