Callithrix jacchus (white-tufted-ear marmoset): 100398671
Help
Entry
100398671 CDS
T03264
Symbol
POLR2B
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03020
RNA polymerase
cjc03420
Nucleotide excision repair
cjc05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100398671 (POLR2B)
09124 Replication and repair
03420 Nucleotide excision repair
100398671 (POLR2B)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
100398671 (POLR2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjc03021
]
100398671 (POLR2B)
03400 DNA repair and recombination proteins [BR:
cjc03400
]
100398671 (POLR2B)
Enzymes [BR:
cjc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100398671 (POLR2B)
Transcription machinery [BR:
cjc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
100398671 (POLR2B)
DNA repair and recombination proteins [BR:
cjc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
100398671 (POLR2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
100398671
NCBI-ProteinID:
XP_002745851
Ensembl:
ENSCJAG00000004118
UniProt:
U3EIW2
LinkDB
All DBs
Position
3:complement(135919762..135983846)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY
HLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgacgcggatgaggatatgcagtatgatgaggatgatgatgaaatcactccggat
ttgtggcaagaagcatgctggattgtaatcagttcctattttgatgagaaagggttggtc
agacaacagctggattcttttgatgagtttattcagatgtctgttcaaagaattgtggaa
gatgctccacctatagacctacaagctgaagctcagcatgctagtggagaagttgaagaa
ccgccaagatatttactgaagtttgaacaaatttatctttccaagcctacccattgggaa
agagatggtgctccttcaccaatgatgcccaatgaagctagattaagaaatctcacgtat
tctgctccactttatgtcgatataacaaaaacagtcattaaagaaggtgaagaacaactt
cagactcaacatcagaaaacttttataggaaaaattccaattatgttgcggtcaacttac
tgccttttgaatggcttgacagatcgtgatctttgtgagttaaatgaatgtcctttggat
cctggtggctatttcattattaatggatcagaaaaggttctgattgcccaagagaaaatg
gcaacaaacacagtttatgtgtttgccaaaaaggattctaaatatgcctacacaggagag
tgtagatcctgtctggagaattcttcccgacccaccagtactatatgggttagcatgctg
gcaagaggaggacagggtgcaaaaaagagtgctattggtcagcgcattgtggcaactcta
ccatatatcaagcaagaagttcccatcattattgtgttcagagcattaggttttgtgtct
gacagagatattttagaacacattatttatgattttgaagatccagagatgatggaaatg
gttaaaccttctcttgatgaagcttttgtcatccaagaacagaatgttgcactaaatttc
attggttcaagaggggcaaagcctggtgttactaaagagaaaagaattaaatatgcaaag
gaagttttacaaaaagaaatgctccctcatgttggtgtcagtgatttttgtgagaccaaa
aaagcctatttcttgggatatatggttcataggttacttctagcagctttgggtagaaga
gaactagacgacagagatcactatggaaacaagagattggatcttgctgggccgttgctt
gcatttttatttagaggtatgtttaagaatttacttaaagaagtgcgaatctatgcacag
aaatttattgatcgaggaaaggattttaacttggagttggcgattaaaacacggattata
tctgatggcctaaaatactcgttagctactggaaactggggtgatcaaaagaaagctcat
caagccagagctggagtatctcaggtgttaaaccgcctgacttttgcgtctactctttct
cacctgcgtcgtttaaattctcctattggtagagatggcaagctagcaaaaccaagacag
ttgcataatacgttgtggggaatggtgtgtcctgctgagaccccagagggccatgctgta
ggacttgtgaagaatttagctttgatggcatatatttcagttggatctcaaccatctcca
attctggaatttttagaagaatggagtatggaaaatttggaagaaatttctcctgcagct
attgctgatgcaaccaaaatttttgttaatggctgctgggttggaatacataaagatccc
gaacaacttatgaataccctaaggaaactgcgacgtcagatggacatcattgtgtctgag
gtttctatgatcagagatattcgagagagggagattcggatctatacagatgcaggccgt
atttgtagaccacttctgattgtggaaaaacaaaagttacttttgaagaagaggcatatt
gatcaattgaaagagagagaatataacaactacagttggcaggatcttgtggccagtggg
gtagtggaatatattgatactctggaagaagaaacagtgatgcttgcaatgactccagat
gatttacaggagaaagaagtagcttattgttctacatacacacactgtgagattcatcca
tcaatgatccttggtgtctgtgcatctattattccctttcctgatcataaccagtcccct
agaaacacataccagtctgctatgggtaagcaggctatgggagtttacattaccaacttc
catgttcgcatggacacattggcccatgttctctattatcctcaaaagccacttgtgact
acacggtccatggaatatctacgatttagagagctgccagcaggcattaactcaattgtg
gccattgcatcatacactggatataatcaggaagactctgttatcatgaatcgttcagct
gtagaccgcggcttcttcaggtctgttttctatcgctcatacaaagaacaggagtctaaa
aaaggatttgatcaagaagaagtttttgagaagcctacacgtgaaacatgccagggcatg
aggcatgccatttatgacaagctggatgatgatggtttgatagctccaggggttcgtgta
tcaggagatgatgttattataggcaaaacagtcaccttgcctgaaaatgaagatgaattg
gagagcactaatagacgctataccaagagggactgtagcacttttctcagaactagcgag
acgggcattgtggatcaggttatggtaactctcaaccaggaaggatataaattttgtaaa
ataagggtccgctctgttagaattccgcagattggagacaaatttgctagtcgacatggt
caaaagggtacttgtggtattcagtatagacaagaggatatgcctttcacctgtgaaggt
atcacccctgatatcatcataaatccccatgccatcccctctcgtatgactattggtcac
ttaattgaatgccttcaagggaaggtatcagctaacaagggtgaaattggtgatgctact
ccatttaatgatgctgttaacgtgcagaaaatttctaatcttttatccgattatggctat
catctcagaggaaatgaggtcctgtacaatgggttcactggtcgaaaaatcacatcacaa
atatttattggccccacttactaccagcgtttgaagcatatggtggatgataagattcac
tctcgtgctaggggacctattcagatccttaatagacagcccatggagggtagatctcgt
gatggtggtctgcgttttggagaaatggaacgagattgccagattgcccatggagcagcc
cagtttttaagggaaagattgtttgaggcatcagatccatatcaggttcatgtttgcaac
ctttgtggaataatggcgattgccaacaccaggacccatacatatgaatgcaggggctgc
cgcaataaaacccagatttctttggtgcgaatgccttatgcatgcaaactattgtttcag
gaacttatgtctatgagtattgcaccacgaatgatgagtgtttag
DBGET
integrated database retrieval system
