Callithrix jacchus (white-tufted-ear marmoset): 100398694
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Entry
100398694 CDS
T03264
Symbol
CSTF1
Name
(RefSeq) cleavage stimulation factor subunit 1
KO
K14406
cleavage stimulation factor subunit 1
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100398694 (CSTF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjc03019
]
100398694 (CSTF1)
Messenger RNA biogenesis [BR:
cjc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
100398694 (CSTF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
CSTF1_dimer
WD40_Gbeta
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_VPS8
Beta-prop_EIPR1
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_Aladin
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_NWD2_C
Beta-prop_NUP159_NUP214
VPS8_N
Ge1_WD40
Frtz
Beta-prop_HPS5
Beta-prop_WDR75_2nd
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
100398694
NCBI-ProteinID:
XP_002747744
Ensembl:
ENSCJAG00000011281
UniProt:
F7GJ78
LinkDB
All DBs
Position
5:49800248..49811021
Genome browser
AA seq
431 aa
AA seq
DB search
MYRTKVGLKDRQQLYKLIISQLLYDGYISIANGLINEIKPQSVCAPSEQLLHLIKLGMEN
DDTAVQYAIGRSDTVAPGTGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDG
QLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLA
FHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPT
LRLYDINTFQCFVSCNPQDQHTDAICSVNYNSSANMYVTGSKDGCIKLWDGVSNRCITTF
EKAHDGAEVCSAIFSKNSKYILSSGKDSVAKLWEISTGRTLVRYTGAGLSGRQVHRTQAV
FNHTEDYVLLPDERTISLCCWDSRTAERRNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFR
ARFWYRRSTTD
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtatagaaccaaagtgggcttgaaggaccgccagcagctctacaagctgatcattagc
cagctgctgtatgacggctacatcagcatcgccaatggcctcatcaatgaaatcaagcct
cagtctgtctgtgcaccctcggagcagctcctgcatctcatcaaactaggaatggaaaat
gatgacaccgcagtgcagtatgcaattggtcgttcagatactgttgcccctggcacagga
attgacctggaatttgatgcagatgtccagactatgtccccagaggcttctgagtatgaa
acatgctatgtcacatcacataagggaccatgccgtgtagctacctatagtagagatgga
cagttaatagctactgggtctgctgatgcttcgataaagatacttgacacagagaggatg
ttagccaaaagtgccatgccaatagaggtcatgatgaatgagaccgcacaacaaaatatg
gaaaaccacccagtgattcgaactctttatgaccatgtggatgaagtcacatgcctcgct
ttccacccaacagaacagattctggcttctggttcaagggattatactcttaaattattt
gattattccaaaccatcagcaaaaagagccttcaaatacattcaggaagctgaaatgtta
cgctccatctcttttcatccttctggagactttatacttgttggaactcagcatcctact
cttcgtctatatgatatcaacacctttcaatgttttgtctcttgcaatcctcaagatcaa
cacaccgatgctatatgttccgttaattacaattctagtgccaatatgtacgtaactgga
agcaaggacggctgcatcaaattatgggatggtgtttcaaatcgatgcatcacaactttt
gaaaaagcacacgatggggctgaagtttgttctgccattttttccaaaaattctaaatac
attctctcaagtggaaaagactctgtagctaaactttgggaaatatcaacaggacgaaca
ctggtcagatacacgggtgcgggtctgagtggacgccaggtgcaccggacacaggctgtg
tttaaccacaccgaggactatgtgttgctgcccgacgagaggacgatcagtctctgctgc
tgggactctaggacggccgagcggagaaacctgctttccttggggcacaacaacattgta
cgctgcatagtgcactcacccaccaaccctgggttcatgacgtgcagcgatgacttcaga
gcgcgattttggtaccggagatccaccaccgactga
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