Callithrix jacchus (white-tufted-ear marmoset): 100399128
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Entry
100399128 CDS
T03264
Symbol
COL17A1
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04382
Cornified envelope formation
cjc04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100399128 (COL17A1)
09158 Development and regeneration
04382 Cornified envelope formation
100399128 (COL17A1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF2868
Motif
Other DBs
NCBI-GeneID:
100399128
NCBI-ProteinID:
XP_009008480
Ensembl:
ENSCJAG00000018404
UniProt:
F7I9Z3
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All DBs
Position
12:complement(93690440..93757074)
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AA seq
1426 aa
AA seq
DB search
MDVTKKNKRDGTEVTERIVTETVTTRLTSLPPKGGTSNGYAKTGSLGGGSRLEKQSLTHG
SSGYINSSGSTRGLGSTSSYRRAHSPASTLPNSPGSTFERKTHVTRHAYEGSSSGNSSPE
YPRKEFASSSTRGRSQTRESEIRVRLQSASPSTRWTELDDVKRLLKGSRSASVSPTRNSS
NTLPIPKKGTVETKIVTASSQSVSGTYDATILDANIPSHVWSSTLPAGSSMGTYHNNMTT
QSSSLLNTNAYSAGSVFGVPNNMASCSPTLHPGLSTSSSVFGMQNNLAPSSTTLSHGTTT
TSTAYGVKKNMPQSPVAGNTGVSTSAACTTSMQNDDLLHKDCKFLILEKDNTPAKKEMEL
LIMTKDSGKVFTASPASITTTSFSEDTLKKEKQAAYNADSGLKAEANGDLKTVSTKGKTS
TADIHSYGSGGGGGHGGGGGVGGAGGGPWGAAPAWCPCSSCCSWWKWLLGLLLTWLLLLG
LLFGLIALAEEVRRLKARVDDLERIRSSKLSYVDKLVRDSKDGLQGIAPAVGADLDKIGL
DSESQEVLWLFVRKKLMAEQENGNLRGSPGPKGDMGSQGPKGDRGFPGPPGSPGLLGNPG
PEGPKGQKGSVGDPGMEGPMGQRGREGPMGPRGEPGPPGFGEKGERGAAGEPGPHGPPGV
PGSVGPKGSSGSPGPQGPPGPVGLQGLQGEVGLPGIKGDKGPMGPPGPKGDQGEKGPRGL
TGEPGMRGLPGAVGEPGAKGAMGPAGPDGHQGPRGEQGLTGMPGIRGPPGPSGDPGKPGL
TGPQGPQGLPGTPGQPGTKGEPGAPGKIVTSEGSSTLTVPGPPGPPGAMGPPGPPGAPGP
AGPAGLPGQQGPQGPRGHQGEQGLPGVSTSGSGSLGLNLQGPPGPPGPQGPKGDKGDPGV
PGAPGIPGGGPGGASSSTMYVPGPPGPPGPPGLPGSISSSGREIQQYISEYMQSDSIRSY
LSGVQGPPGPPGPPGPVTTITGETFDYSRLASQVVSYLQTSGYSINLSPSSSISSEDILA
VLQRDDVRQYLRQYLMGPRGPPGPPGASGDGSLLSLDYAKLSSHILSYMSSSGISIGLPG
PPGPPGLPGTSYEELLSLLRGSEFRGIIGPPGPPGPPGIPGNAWSSISMEDLSSYLQTVG
LSSIPGPPGPPGPPGPRGPPGVSGALATYAAENSDSFRSELISYLTSPDVRSFIVGPPGP
PGPQGPPGNSRHLSTDASHSRSSSSSHSSSIRRGSSYSSSMGTGGAGAGSLGTGGAFGAA
AGDGGPYGTDIGLGGGYGAAAEDSMYGGNGGPFGADFAGGLDYNELAVRVSESMQRQGLL
QGMAYTVQGPPGQPGPQGPPGISKVFSAYSNVTADLMDFFRTYGAIQGPPGQKGEMGTPG
PKGDRGPAGPPGHPGPPGPRGHKGEKGDKGDQVYVGRRRRSIAVKP
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atggatgtaaccaagaaaaacaaacgagacggtactgaagttaccgaaagaattgtcact
gaaacagtaaccacaagacttacatccttaccaccaaaaggcgggaccagcaatggctat
gctaaaacaggttctcttggcggagggagccggctggagaaacaaagcctgactcatggc
agcagtggctacataaactcaagtggaagcacacgaggccttggctccacctctagttac
aggagggctcactcacctgcctccactctgccgaactccccaggctcgacctttgaaagg
aaaactcacgttacccgccatgcatacgaagggagctccagtggcaactcttctccggag
tatcctcggaaggagtttgcctcttcttcaaccagaggacggagtcaaacacgagagagt
gaaattcgagttcgactgcagagtgcgtccccatctacccgatggacagaattggatgat
gttaagcgtttgctcaaggggagtcgatcggcaagcgtgagccccacccggaattcctcc
aacactctccccatccccaagaaaggcactgtggagaccaaaattgtgacagcgagctcc
cagtcagtgtcaggcacctacgatgcaacgatcctggatgccaacattccctcgcatgta
tggtcctccaccttgcctgcagggtcctccatggggacctatcacaacaacatgacaaca
cagagctcgtccctcctcaacaccaatgcctactctgcaggatcagtctttggagttcca
aataacatggcatcctgctcccccactttgcacccgggactcagtacatcctcctcagta
tttggcatgcagaacaatctggcccccagctcgactaccctgtcccatggcaccaccact
acttccacagcatatggggtgaagaaaaacatgccccagagccctgtggctgggaacact
ggtgtttccacctctgctgcctgcaccacaagtatgcagaatgatgaccttttgcacaag
gattgcaagttcctgatcctagagaaagacaatacacctgccaagaaggagatggagctg
ctgatcatgaccaaggacagtggcaaggtctttacggcctcaccagccagcatcactaca
acttctttttcagaagacaccctaaaaaaagaaaagcaagctgcctacaatgctgactca
ggcctaaaagctgaagctaatggagacctgaagactgtgtccacaaagggcaagaccagc
actgcagatatccacagctatggcagcggtggtggtggtggccacggaggaggtggcggt
gttggtggcgctggtggcggcccgtggggagcggcgccagcctggtgcccctgcagctcc
tgctgtagctggtggaagtggctcctgggcctgctgctcacctggctgctgctcctgggg
ctgctcttcggcctcattgctctggcggaggaggtgagaaggctgaaagcccgtgtggac
gatctggagaggatcaggagcagcaagctgtcctacgtggataagctggtgagagacagc
aaggacggcctccagggcatagcacctgcagtaggagcagatctggacaaaattgggctg
gacagcgaaagccaggaggtgctctggttgttcgtgaggaaaaaactgatggcagaacag
gaaaatggaaatctccgaggaagccctggccctaaaggtgacatgggaagccaaggccct
aaaggagatagagggttccctggccctccaggtagccctgggctcttgggcaacccaggt
ccagaaggtccaaagggtcaaaaaggcagcgtgggagatcccggcatggaaggccccatg
ggccagagagggcgagaaggccccatgggacctcgtggtgagccagggcctcctgggttt
ggagagaaaggggaaagaggggctgctggtgaaccaggtcctcacggcccacctggtgtc
ccaggttctgtgggtcccaaaggttccagcggctctcctggcccacagggacccccaggt
cctgtaggtctccaagggctccaaggtgaagtgggacttcctggtatcaaaggtgacaaa
ggaccgatgggaccaccaggacctaaaggtgaccagggtgagaaaggacctcgaggtctc
acaggcgagcctggcatgagaggtttgcctggtgctgttggtgagcccggagctaaaggg
gcaatgggtcctgctggcccagatggacaccaaggcccaagaggtgaacaaggtcttaca
gggatgcctggaatccgtggcccaccaggaccttctggagacccaggaaagccaggtctc
acaggaccccagggacctcagggacttcctggtacccccggtcaaccaggaacaaaaggt
gaaccaggagctccaggcaagattgtgacttcagaggggtcatcgacgctcactgtccca
ggccccccaggacctcctggagccatgggacccccaggacctccaggtgccccaggccct
gccggcccagctggtctcccaggacagcaaggtccccaaggccccagaggacaccaaggc
gagcaaggcctcccaggtgtctcaacctcagggtctggttctctcggactcaaccttcag
ggaccaccaggcccacctggcccccagggacccaaaggtgacaaaggtgatccaggtgtc
ccaggggctcctggcattcctggtggtggtcctggaggggcatcatcaagtaccatgtac
gtgccaggcccgccaggcccccctgggccccctgggcttccaggctccatcagcagctct
ggccgggagattcagcagtacatctctgagtacatgcagagtgacagtattagatcttac
ctatctggagttcagggtccgccaggcccacctggtcccccaggacctgtcaccaccatc
acaggcgagactttcgactattcaaggctggcaagccaagttgtgagctacttacagact
tcggggtacagcatcaacttgtccccctcatcctccatctcttctgaagacatcctggct
gtgctgcagcgggatgatgtgcgtcagtacctacgtcagtacctgatgggccctcggggt
ccgccggggccaccaggagccagtggagatgggtccctcctgtctttggactatgcaaag
ctgagtagtcacattctcagctacatgtcgagttctgggatcagcattgggcttcctggt
cccccagggccacctggcttgccgggaacctcctatgaggagctcctctccttgctacga
gggtctgaattcagaggcatcattggacccccaggtcccccggggccaccagggatccca
ggcaatgcgtggtccagcatcagcatggaggacctctcctcttacttacaaactgtcggc
ttgtcatccatcccaggtcctccaggccctcctggtcctccaggtcctcgagggccccct
ggtgtctcaggagctctggcaacctacgcagctgaaaacagcgacagtttccggagtgag
ctcatcagctaccttacaagtcctgatgtgcgcagtttcattgttggccccccaggccct
cctgggccacagggaccccctgggaacagccgccacctgtccacggatgcctcccacagt
cggagcagcagctcctcacacagctcatccatcaggcggggcagttcctacagctcttcc
atgggcacaggaggagctggtgcaggctccctgggcacagggggtgcctttggtgcagct
gcaggagacggggggccctatggcactgacatcggcctaggtggaggctatggggcagca
gcagaagacagcatgtatggtggcaatggcggaccattcggggctgactttgctggaggt
ctggattacaatgagctggctgtgcgggtatcagagagcatgcagcgtcagggcctactg
caagggatggcctacactgtccagggcccaccaggccagcctgggccccaggggccaccc
ggcatcagcaaggtcttctctgcctacagcaatgtgaccgcagacctcatggacttcttc
cgaacttatggagccattcaaggaccccctgggcaaaaaggagagatgggcactccagga
cctaaaggtgacaggggccctgctggaccaccaggtcatcctgggccacctggccctcga
gggcacaagggagaaaaaggagacaaaggtgaccaagtctatgttgggcggagaaggaga
agtattgctgtcaagccgtga
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