Callithrix jacchus (white-tufted-ear marmoset): 100399275
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Entry
100399275 CDS
T03264
Symbol
SMG7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X7
KO
K14409
protein SMG7
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100399275 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjc03019
]
100399275 (SMG7)
Messenger RNA biogenesis [BR:
cjc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
100399275 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
100399275 (SMG7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
100399275
NCBI-ProteinID:
XP_002760326
Ensembl:
ENSCJAG00000005135
UniProt:
U3BZ42
LinkDB
All DBs
Position
18:35338949..35420767
Genome browser
AA seq
1136 aa
AA seq
DB search
MSLQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV
KTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKAFNSQQLVHVTVI
NLFQLHHLRDFSNETEQHSYSQDEQLCWTQLLALFMSFLGILCKCPLQNESPEESYNAYP
LPAVKVSMDWLRLRPRVFQEAVVDERQYIWPWLISLLNSFHPHEEDLSSTNATPLPEEFE
LQGFLALRPSFRNLDFSKGHQGITGDKEGQQRRIRQQRLISIGKWIADNQPRLMQCENEV
GKLLFITEIPELILEDPSEAKENLILQETSVIESLAADGSPGLKSVLSTSRNLSNNCDTG
EKPMVTFKENIKPREVNRDQGRSFPPKEVRRDYSKGITVTKNDGKKDNNKRKTETKKCTL
EKLQETGKQNVAVQVKSQTELRKTPVSEARKTPVTQTPTQASNSQFIPIHHPGAFPPLPS
RPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQVQAGKQSHIPYSQ
QRPSGPGPMNQGPQQSQPPSQQPLTSLPAQPTAQPTSQLQVQALTQQQQSPTKAVPALGK
SPPHHSGFQQYQQADASKQLWNPPQVQGPLGKIMPVKQPYYLQTQDPIKLFEPSLQPPVM
QQQPLEKKMKPFPMEPYNHNPSEVKVPEFYWDSSYSMADNRPVMAQQANMDRRGKRQTVF
RPEQDPVPRMPFEKSLLEKPSELMSHSSSFLSLTGFSLNQERYPNNSMFNEVYGKNLAPS
SKAELNPSMAPQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNH
NSVPFSNFGPIGTPDNRDRRTADRWKTDKPAMGGFGIDYLSATSSSESNWHQASTSSGPW
TGHGPSMEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGQGTMNPPH
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcagagcgcgcagtacctccggcaggcagaagtcctgaaggctgacatgaca
gattctaagctgggtccagctgaagtctggacatccaggcaggctctgcaggacctgtac
cagaaaatgctagttactgatttggaatacgctttagacaagaaagtagagcaggatctc
tggaatcacgcctttaagaatcagatcacaacactacaaggccaggcaaagaatcgagca
aatccgaatcggagtgaagttcaggcaaacctttctctgttcctagaggcagctagtggc
ttctatactcagttattacaagaactgtgtacagtatttaatgtagatttaccatgccgt
gtgaagtcttcccaattgggaattatcagcaataaacagacgcataccagcgccatagtg
aagccacagtctagctcctgttcctatatctgccagcactgcctcgtccaccttggagac
attgctcgatacagaaaccagaccagccaggcagagtcctactataggcatgcagctcag
cttgtcccctccaatggtcagccttacaatcagttggctatcttagcttcttccaaagga
gaccatctgaccacaattttctactactgcagaagcattgctgtgaagttccctttccca
gctgcctccactaatctgcaaaaagcactttctaaagcactggaaagccgagatgaggtg
aaaaccaagtggggtgtttctgacttcatcaaggcctttattaaattccacggtcatgtg
tacctgagtaagagcttggaaaagttgagccctcttcgagagaaattggaagaacagttt
aagaggctgctattccaaaaagctttcaactctcagcagttagttcatgtcactgtcatt
aacctgtttcaacttcatcaccttcgtgactttagcaatgaaaccgagcagcacagttac
agccaagatgagcagctatgttggacacagttgctggccctctttatgtcttttcttggc
atcctgtgcaagtgtcctctccagaatgagtctccggaggagtcctacaacgcctaccct
cttccagcagtcaaggtctccatggactggctaagactcagacccagggtcttccaggag
gcagtggtggatgaaaggcagtacatttggccctggctgatttctcttctgaatagcttc
catccccacgaagaagacctctcaagtactaacgcaacaccacttccagaggagtttgaa
ttacaaggattcttggccttgagaccttctttcaggaacttggatttttccaaaggtcac
cagggtattacaggagacaaagaaggtcagcaacgacgaatacgacagcagcgcttgatc
tctataggcaaatggatcgctgataatcagccaaggctgatgcagtgtgaaaatgaagta
gggaaattgttgtttatcacagaaattccagaattaatactggaagaccccagtgaagcc
aaagagaacctcattctgcaagaaacatctgtgatagagtcgctggctgcagatgggagc
ccagggctgaaatcagtgctatctacaagccgaaatttaagcaacaactgtgacacagga
gagaagccaatggttaccttcaaagagaacattaagccacgagaagtgaacagagaccag
ggaagaagttttcctcccaaagaggtgagaagggactatagcaaaggaataactgtaact
aagaatgatggaaagaaggacaacaacaagaggaaaactgaaaccaagaaatgcacctta
gaaaagttacaggaaacaggaaagcagaatgtggcagtgcaggtaaaatcccagacagaa
ttaagaaagactccagtgtctgaagccaggaaaacaccggtaactcaaactccaacccaa
gcaagtaactcccagttcatccccattcatcaccctggagccttccctcctcttcccagc
aggccagggtttccgcccccaacatatgttatcccccctcctgtggcattttctatgggc
tcaggttacaccttcccagctggtgtttctgtcccgggaacctttcttcagcctacagct
cactctccagcaggaaaccaggtgcaagctgggaaacagtcccacattccttacagccag
caacggccctctggaccagggccaatgaaccagggacctcaacaatcacagccaccttcc
cagcaaccccttacatctttaccagctcagccaacagcacagcctacaagccagttgcag
gttcaagctctaactcagcaacaacaatcccctacaaaagctgtgccagctttggggaaa
agcccgcctcaccactctggattccagcagtatcaacaggcagatgcctccaaacagctg
tggaatcctcctcaggttcaaggcccattagggaaaattatgcctgtgaaacagccctac
taccttcagacccaagaccccataaaactgtttgagccgtcattgcaacctcctgtaatg
cagcagcagcctctagaaaaaaaaatgaagccttttcccatggagccatataaccataat
ccctcagaagtcaaggtcccagaattctactgggattcttcctacagcatggctgataac
agacctgtaatggcacagcaagcaaatatggaccgcaggggcaaacggcaaacagtcttc
cgtccagagcaggatcctgtgcccaggatgccgtttgagaaatccttattggagaaaccc
tcagagctcatgtcacattcatcctctttcctgtccctcaccggattctctctcaatcag
gaaagatacccaaataatagtatgttcaatgaggtatacgggaaaaacctggcacccagc
tccaaagcagaactcaatccctcaatggctccccaggaaacatctctgtattcccttttt
gaaggaactccatggtctccatcacttcctgccagttcagaccattcaacaccagccagc
cagtctcctcattcctctaacccaagcagtctgcccagctctcctccaactcacaaccat
aattctgttccattctccaattttggacccattgggactccagataacagggataggagg
actgcagatcggtggaaaactgataagccagccatgggtgggtttggcattgattatctc
tcagcgacgtcatcctctgagagcaattggcatcaggccagcacttcaagtggcccctgg
acaggccatggcccctccatggaggattcctctgctgttctcatggaaagcctaaagtct
atctggtccagttccatgatgcatcctggaccttccgctctggagcagctgttaatgcag
cagaagcagaaacagcaacggggacaaggcaccatgaaccctccacactga
DBGET
integrated database retrieval system
