Callithrix jacchus (white-tufted-ear marmoset): 100399515
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Entry
100399515 CDS
T03264
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X2
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjc03021
]
100399515 (CHD1)
03036 Chromosome and associated proteins [BR:
cjc03036
]
100399515 (CHD1)
Transcription machinery [BR:
cjc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
100399515 (CHD1)
Chromosome and associated proteins [BR:
cjc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
100399515 (CHD1)
SLIK complex
100399515 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
ResIII
HDA2-3
DEAD
CHDCT2
Motif
Other DBs
NCBI-GeneID:
100399515
NCBI-ProteinID:
XP_002744792
Ensembl:
ENSCJAG00000009559
UniProt:
U3E1Z5
A0A5F4W647
LinkDB
All DBs
Position
2:108614791..108688424
Genome browser
AA seq
1712 aa
AA seq
DB search
MNGQSDEESVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGS
QSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQQQQQQHQASSN
SGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEERDKSSCDETE
SDYEPKNKVKSRKPQNRSKSKNGKKILGQKKRQIDSSEEEDDEEDYDNDKRSSRRQATVN
VSYKEDEEMKTDSDDLLEVCGEDVPQPEEEEFETIEKFMDCRIGRKGATGATTTIYAIEA
DGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQET
KRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYS
ECSWEDGALISKKFQPCIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHEGL
ELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPL
STLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKD
KAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHF
IMPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMS
ALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEA
LQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK
GELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAH
RIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTP
FNKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQF
KVANFSNMDEDDIELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYMLPRMRNCAKQ
ISFNGSEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYK
KFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKG
PTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKPAHFDIDWGKEDDS
NLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLSKDLAK
KEALRLSGAGSSKRRKTRAKKNKAMKSVKMKEEIKSDSSLPSEKSDEDDDKLIESKSDSK
ERSKKSSASDAPVHITASGEPVLISEESEELDQKTFSICKERMRPVKAALKQLDRPEKGL
SEREQLEHTRQCLIKIGDHITECLKEYTNPEQIKQWRKNLWIFVSKFTEFDARKLHKLYK
HAIKKRQESQQNNDQNSNLNPHVIRNPDVERLKENTNHDDSSRDSYSSDRHLSQHHDHHK
DRHQGDSYKKGDSRKRPYSSFSNGKDHRDWDHYKQDSRYYSDREKHRKLDDHRSRDHRSN
LEGSLKDRSHSDHRSHSDHRLHSDHRSSSEYTHHKSSRDYRYHSDWQMDYRASSSGPRSP
LDQRSPYGSRSPFEHSVEHKSTPEHTWSSRKT
NT seq
5139 nt
NT seq
+upstream
nt +downstream
nt
atgaatggacagagtgatgaagaaagtgttagaaacagtagtggagaatcaagccagtcg
gatgatgattctgggtcagcttcaggctctggatctggttcgagttctggaagcagtagt
gatggaagcagtagccagtcaggtagcagtgactctgactccggatctgaatcaggcagt
cagtcagagtctgagtcagacacttcccgagaaaacaaagttcaagcaaaaccaccgaaa
gttgatggagctgagttttggaaatctagccctagtattctggctgttcagagatctgca
atgctcaagaagcagcagcagcagcagcagcagcagcaacaacatcaagcctcatctaat
agcggatcagaagaggattcctctagcagtgaagattctgatgactcatcaagtgaggtt
aaaaggaaaaagcataaagatgaagattggcaaatgtctgggtcaggatctccatctcag
tctggttcagattcagaatccgaagaagagagagataaaagcagttgtgatgaaacagaa
tctgattatgagccaaaaaacaaagtcaaaagcaggaaacctcaaaatagatctaagtca
aaaaatggaaagaagattcttggacaaaaaaagagacagattgattcctctgaggaggag
gatgatgaagaagattatgataatgataaaagaagttctcgtcgccaagcaactgttaat
gttagctataaggaggatgaagaaatgaaaacagattctgatgacctactggaagtctgt
ggagaggatgttcctcaacctgaggaagaggaatttgaaaccatagaaaagtttatggat
tgtcggattgggagaaaaggagctactggtgctactacaaccatctatgccattgaagcc
gatggtgacccaaatgcaggctttgaaaaaaacaaagaaccaggagagattcagtattta
attaaatggaaaggatggtcccatatccacaacacttgggagacagaagaaaccctcaag
cagcagaatgttagaggaatgaaaaaactggataattataagaaaaaagatcaggaaaca
aaaagatggttgaaaaatgcttctccagaagatgtggaatattataattgccagcaagaa
cttacagatgatctacataaacagtatcaaatagtggagcgtataattgctcattccaat
caaaagtcagcagctggttatcctgattattattgcaaatggcaaggccttccatactca
gagtgcagctgggaagatggagctctcatttccaaaaagtttcaaccatgcattgatgag
tattttagcaggaaccaatcaaaaaccactccttttaaagattgcaaagtattaaaacaa
aggccaaggtttgtagccctgaagaagcagccatcctatattggaggacatgagggctta
gaattaagagattatcaactgaatggtttaaattggcttgctcattcttggtgcaaagga
aatagttgcatactcgctgatgaaatgggccttggaaaaacaatacagacgatctcattt
ctgaattatttgtttcatgaacatcaattatatggaccttttctgttggtagtaccactc
tccactctcacttcctggcaaagggaaattcagacatgggcttctcaaatgaatgctgtg
gtttatttaggtgacattaatagcagaaacatgataagaactcatgaatggatgcatcct
cagaccaaacggttaaaatttaatatactgttaacaacttacgaaattttattaaaggat
aaggcattccttggaggtctgaattgggcatttataggtgttgatgaagcacatcgatta
aagaatgatgactcccttctgtataaaactttaatagattttaaatctaatcatcgtctc
cttatcactggaactcctctacaaaattccctcaaagagctctggtctttgctacatttc
attatgccagaaaagttttcttcctgggaagattttgaagaagaacatggcaaagggaga
gaatatggttatgcaagccttcacaaggagcttgagccgtttctgttacgccgagttaag
aaagatgtggaaaaatctcttcctgccaaggttgagcagattttaagaatggaaatgagt
gctttacagaaacaatattacaaatggattttaactaggaattacaaagccctcagcaaa
ggttccaagggcagtacctcaggctttttgaacattatgatggagctaaagaaatgttgt
aaccattgctacctcattaaaccaccagataataatgaattctataataaacaggaggcc
ttacaacacttaattcgtagtagcggaaaattgattcttcttgacaagctattaattcgc
ctaagagaacgaggcaatcgagttcttattttttcacaaatggtgcggatgttagatata
cttgcagaatatttgaaataccgtcaatttccttttcaaagattagatggatcaataaaa
ggagaactgaggaaacaagctctagatcattttaatgctgagggatcagaggatttctgc
tttttgctgtccacaagagctggaggtctagggattaatttagcctctgctgacactgtt
gttatatttgattccgattggaatccacagaatgatcttcaggcacaggctagagcccat
cgaattgggcaaaagaaacaggtgaatatttatcgtctagttacaaagggatcagttgaa
gaagatattcttgaaagggccaaaaagaagatggtgttagatcatcttgtaattcaaaga
atggacacaactgggaagacagtactacatacaggttctgccccatcaagttctactcct
ttcaataaagaagaattatcagccattttaaagtttggtgctgaggagctttttaaggaa
cctgaaggcgaagaacaagagccccaggaaatggatatagatgaaatcttgaagagggct
gaaactcatgaaaatgaaccaggtcctttaaccgttggagatgaattgctttcccagttc
aaggttgccaacttctcaaatatggatgaggatgacattgagttggaacctgaaagaaat
tcaaagaattgggaggagattattccagaagatcaaagaagacgattagaagaagaggaa
agacaaaaggaactcgaggaaatttatatgctcccaagaatgagaaattgtgcgaaacag
attagtttcaacggaagtgaaggtaggcgcagtagaagtaggagatactctggatccgat
agtgattccatctcagaaaggaaaaggccgaagaaacgtggaagaccacgaactattcct
cgggagaatattaaaggatttagtgatgcagaaattaggcggtttatcaagagctataag
aaatttggtggtcctctggaaagattagatgcaattgctcgagatgctgaattagttgat
aagtcggaaacagaccttagacgactaggagaattggtacataatggttgcattaaagct
ttaaaggatagttcttcaggaacagaacgaacaggtggtagactcggaaaagtgaagggt
ccaacattccgaatatcaggagtacaggtgaatgccaagctagtcatctcccatgaagaa
gaattaatacctttacacaaatccattccttctgatccagaagaaagaaagcagtatact
attccatgccacacaaagccagctcattttgatatagactggggcaaagaagatgattcc
aatttgttaattggtatctatgaatatggatatggaagctgggaaatgattaaaatggat
cctgacctcagtctaacacacaagattcttccagatgatcccgataaaaaaccacaagca
aaacagttgcagacccgtgcagactacctcatcaaattacttagtaaagatcttgcaaag
aaagaagctctgagactttctggtgcgggaagttcaaagaggagaaaaacaagagctaag
aagaataaagcaatgaagtctgtaaaaatgaaagaggaaataaagagtgattcttctctg
ccttctgagaagtctgatgaagatgatgataaattgattgaatccaagtccgatagtaaa
gaaagatccaagaaatcttcagcatcagatgctccagttcatatcactgcaagtggtgaa
ccagttctcatatctgaagaatctgaagagctggatcagaagactttcagcatttgtaaa
gaaagaatgaggcctgttaaagcagctttgaaacaacttgataggcctgagaaaggcctt
tcagaaagagaacaactagagcatactagacagtgtttaataaaaattggagaccatatt
acagaatgtctaaaagagtatacaaatcctgaacaaattaagcaatggagaaaaaacctg
tggatttttgtatctaagtttactgaatttgatgcgagaaaattacataaattatataag
catgctattaaaaaacggcaggaatctcagcaaaacaatgatcagaacagcaacttgaac
cctcacgtgattagaaatccagatgtggaaagattaaaagagaatacaaatcacgatgat
agcagcagggacagttattcctctgataggcacttatctcagcaccatgatcatcataaa
gaccgacatcagggagattcttacaaaaagggtgattccaggaaaagaccctattcttct
tttagtaatggtaaagaccatcgtgattgggatcactacaagcaagacagcagatactac
agtgacagagagaaacacagaaaactagatgatcacaggagtagagatcacaggtcaaat
ttggaaggaagtttaaaagatagatctcattctgatcatcgttctcactcagatcatcgg
ttacattcagaccaccggtcgagttctgaatatacgcaccataaatcttccagggattat
aggtatcactcagattggcaaatggactacagagcttccagcagtggccctaggtcacca
ctagatcagagatctccttatgggtccagatctccatttgaacattcagttgaacacaaa
agtacgccggagcatacctggagtagtcggaaaacataa
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integrated database retrieval system
