Callithrix jacchus (white-tufted-ear marmoset): 100400909
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Entry
100400909 CDS
T03264
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04151
PI3K-Akt signaling pathway
cjc04510
Focal adhesion
cjc04512
ECM-receptor interaction
cjc04518
Integrin signaling
cjc04974
Protein digestion and absorption
cjc05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100400909 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100400909 (COL2A1)
04518 Integrin signaling
100400909 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100400909 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100400909 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
100400909 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cjc00536
]
100400909 (COL2A1)
Glycosaminoglycan binding proteins [BR:
cjc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100400909 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
100400909
NCBI-ProteinID:
XP_035111051
Ensembl:
ENSCJAG00000015054
LinkDB
All DBs
Position
9:complement(369245..401647)
Genome browser
AA seq
1487 aa
AA seq
DB search
MIRLGAPQTLVLLTLLVAAVLRCQGQDVQEAGSCVQDGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDVKDCLSPEIPFGECCPICPTDLATASGQPGPKGQKGEPGDIKDIVGPKG
PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA
AQMAGGFDDKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG
PRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQG
APGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGARG
LPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGPPGEKGEPG
DDGPSGADGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPSG
PTGKQGDRGEAGAQGPMGPSGPAGARGIPGPQGPRGDKGEAGEPGERGLKGHRGFTGLQG
LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADQAAGGLRQHDAEVDATLK
SLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG
ETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRL
LSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTK
HTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccagacgttggtgctgctgacgctgctcgtcgccgccgtc
cttcggtgtcagggccaggatgtccaggaggctggcagctgtgtgcaggatgggcagagg
tataatgataaggatgtgtggaagccggagccctgccggatctgtgtctgtgacactggg
actgtcctctgcgacgacataatctgtgaagacgtgaaagactgcctcagccccgagatc
cccttcggagagtgctgccccatctgcccaactgacctcgccactgccagtgggcaacca
ggaccaaagggacagaaaggagaacctggagacatcaaggatatcgtaggacccaaagga
cctcctgggcctcagggacctgcaggggaacaaggacccagaggggaccgtggtgacaaa
ggtgaaaaaggtgcacctggacctcgcggcagagacggagaacctgggacccctggaaat
cctggcccccctggtcctcctggcccgcctggtccccccggtcttggtggaaactttgct
gcccagatggctggaggatttgatgacaaggctggtggtgctcagatgggagtgatgcaa
ggaccaatgggccccatgggacctcgaggacctccaggccctgcaggtgctcccgggcct
caaggatttcaaggcaatcctggtgaacctggtgaacctggcgtctctggtcccatgggt
ccccgcggtcctcctggtccccctggaaagcctggtgatgatggcgaagctggaaaacct
ggaaaatctggtgaaagaggtccaccaggtcctcagggtgctcgcggcttcccaggaacc
ccaggccttcctggtgtcaaaggtcacagaggttatccgggcctggacggtgctaaggga
gaggcgggcgcccctggtgtgaagggtgagagtggttcccccggcgagaacggttctccg
ggcccgatgggtcctcgtggtctgccaggtgaaagaggacggactggccctgctggtgcc
gcgggtgcccggggcaacgatggtcagccaggccctgcagggcctccgggtcctgtcggt
cctgccggtggtcctggcttccctggtgctcctggagccaagggtgaagctggccccact
ggtgcccgtggtcctgaaggtgctcaaggtcctcgcggtgaacccggtactcctgggtcc
cctgggcctgctggtgcctctggtaacccgggaacagatggaattccgggagccaaagga
tcggctggtgctcctggcattgctggtgctcctggcttccctgggccacggggtcctcct
ggccctcaaggtgcaactggtcctctgggcccgaaaggtcagacgggtgaacctggtatt
gctggcttcaaaggtgaacaaggccccaagggagaacctggccctgctggcccacaggga
gcccctggacccgctggtgaagaaggcaagagaggtgcccgcggagagcctggtggcgtt
gggcccattggtccccctggagaaagaggtgctcctggcaaccgcggtttcccaggtcaa
gatggtctggcaggtcccaagggagcccctggtgagcgagggcccagtggccttgctggc
cccaagggagccaacggtgaccctggccgtcccggagaacctggccttcctggagcccgg
ggtctcactggccgccctggagatgctggtcctcaaggcaaagttggcccttctggggcg
cctggtgaagatggtcgtcctggacctccaggtcctcagggtgctcgtgggcagcctggt
gtcatgggtttccctggccccaaaggtgccaatggtgagcctggcaaagctggtgaaaag
ggactgcctggtgctcctggtctgagaggtcttcctggcaaagatggtgagacaggtgct
gctggaccccctggccctgctggacctgctggtgaacgaggcgagcagggtgctcctggg
ccatctgggttccagggacttcctggccctcctggtcccccaggtgaaggtggaaaacca
ggtgaccagggtgttcccggtgaagctggagcccctggcctcgtgggtcccaggggtgaa
cgaggtttcccaggtgaacgtggctctcccggtgcccagggcctccagggtgcccgtggc
ctccccggcactcctggcactgatggtcccaagggtgcatctggcccagcaggccccccc
ggggctcagggccctccaggtcttcagggaatgcccggcgagaggggagcagctggtatt
gctgggcccaagggcgacaggggtgatgttggtgagaaaggccccgagggagcccctgga
aaggatggtggacgaggtctgacaggtcccattggcccccctggcccagctggtgctaac
ggtgagaagggagaagttggacctcctgggcctgcaggaagtgctggtgctcgtggtgct
ccgggtgaacgtggagagactggcccccctggaccagcaggattcgctgggcctcctggt
gctgatggccagcctggggccaagggtgagcaaggagaggccggccagaaaggtgacgct
ggtgcccctggtcctcagggcccctctggagcacctgggcctcagggtcctactggagtg
actggtcctaaaggagcccgaggtgcccaaggccccccgggagccaccggattccctgga
gctgctggccgcgttggacccccaggctccaatggcaaccctggcccccctggcccccct
ggtccttctggaaaagatggtcccaaaggtgctcgaggagacagcggtccccctggccga
gctggtgaccccggcctccaaggtcctgctggaccgcctggcgagaagggagagcctgga
gatgacggtccctctggtgctgatggtccaccaggtccccagggtctggctggtcagaga
ggcatcgtcggtctgcctgggcagcgtggtgagagagggttccccggcttgcccggccca
tcgggtgagcccggcaagcagggtgctcctggagcatctggagacagaggtcctcctggc
cccgtgggtcctcctggcctgaccggccctgcaggtgaacctggacgagagggaagcccc
ggtgctgatggtccccctggcagagatggcgcggctggagtgaagggtgatcgtggtgag
actggtgccgtgggcgctcctggagcccctgggccccctggctctcctggcccctctggt
ccaactggcaagcagggagacagaggagaagctggtgcacaaggccccatgggaccctcg
ggaccagctggagcccggggaatcccgggtcctcaaggtccccgaggtgacaaaggagag
gctggagagcctggagagagaggcctgaagggacaccgtggcttcactggtctgcagggt
ctgcccggcccccctggtccttctggagaccaaggtgcttctggtcctgctggtccttct
ggccctagaggtcctcctggccccgttggcccctctggcaaagatggtgctaatggaatc
cctggccccattgggcctcctggtccccgtggacgatcaggcgaaactggccccgctggt
cctcctggaaatcctggaccccctggtcctccaggtccccctggccctggcattgacatg
tccgcttttgctggccttggccagagagagaagggccctgaccccctgcagtacatgcgg
gccgaccaggcagccggtggcctgagacagcatgacgccgaggtggatgccacgctcaag
tccctcaacaaccagatcgagagcatccgcagccccgagggctcccgcaagaatcctgcc
cgcacctgccgagacctgaaactctgccaccctgagtggaagagcggagactactggatt
gaccccaaccagggctgcaccttggacgccatgaaggttttctgcaacatggagactggc
gagacctgcgtctaccccaacccagccaatgttcccaaaaagaactggtggagcagcaag
agcaaggagaagaaacacatctggtttggagaaaccatcaacggtggcttccatttcagc
tatggagatgacaacctggctcccaacactgccaacgtccagatgaccttcctacgcctg
ctgtccacggaaggctcccagaatatcacctaccactgcaagaacagcattgcctacctg
gatgaagcagctggtaacctcaagaaggccctgctcatccagggctccaacgacgtggag
atccgggcagagggcaacagcaggttcacgtacactgccctgaaggacggctgcacgaaa
cacaccggtaagtggggcaagactgtcatcgagtaccggtcacagaagacctcacgcctc
cccatcattgacattgcacccatggacataggagggcctgagcaggaattcggtgtggac
atagggccagtctgcttcttgtaa
DBGET
integrated database retrieval system
