Callithrix jacchus (white-tufted-ear marmoset): 100401063
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Entry
100401063 CDS
T03264
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
100401063 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cjc04131
]
100401063 (VPS8)
Membrane trafficking [BR:
cjc04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
100401063 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_Vps41
TPR_VPS8_2
zf-RING_Vps41
WD40_CDC20-Fz
Clathrin
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_UBOX
zf-RING_2
zf-C3H2C3
zf-RING_5
UBA_HOIP
PHD
zf-C3HC4
Beta-prop_HPS5
EIF3I
Motif
Other DBs
NCBI-GeneID:
100401063
NCBI-ProteinID:
XP_035131186
Ensembl:
ENSCJAG00000014866
LinkDB
All DBs
Position
15:7499225..7759840
Genome browser
AA seq
1426 aa
AA seq
DB search
MESEPDHETVDQSLYAKTAEEELNKSFSLEASLSKFSYIDLDKELEFKNDLIDDKEFDIP
QVDTPPTLESILNETDDEDESFILEDPTLLNIDTVDSHSYDTSSVASSDSGDRTNLKRKK
KLLDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAIAVSSLIAVGTSHGLALIFDQ
NQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQVTMWDLASGKLLRSITDAHP
PGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEPLH
SKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVH
NYVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTVVLLDSVE
KLHVIDRQTQEELETVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSYGG
QIFYLGTKSVYVMMLRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDVSKRK
VIVADRMVEILFHYADRALKKCPDQGKIQVMEQHFQDMVPVIVDYCLLLQRKDLLFSQMY
DKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLIVHFQDKKLMENVEALIVHMDIT
SLDIQQVVLMCWENRLYDAMIYVYNRGMNEFISPMEKLFRVIAPPLNAGKTLTDEQVVMG
NKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSAEASPEEEIYPYIRTLLH
FDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQL
AKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMAEK
AEFYQICEFMYEREHQYDKIIDCYLHDPLREEEVFNYIHNILSIPGHSAEEKQSVWQKAM
DHIEELVALKPCKAAELVATHFSGHIETVIEKLQNQVLLFKFLRSLLDPREGVHINQELL
PVSPCITEQFIELLCQFNPNQVIETLRVLECYRLEETIQITQKYQLHEVTAYLLEKKGDT
HGAFLIMLERLQSKLQEITHQGENTKEDSSLKDVEDTMVETIALCQRNSHNLNQQQREAL
WFPLLEAMMAPQKLPSSAVPHLHSEALKSLTMQVLNSMAAFIALPSILQRILQDPVYGKG
KLGEIQGLILGMLDTFNYEQTLLETTTSLLNQDLHWSLCNLRASVTRGLNPKQDYCSICL
QQYKRRQEMADEIIVFSCGHLYHSFCLQSKECTMEIEGQTRWTCYKCSSSNKVGKLSENA
SEIKKGRITPSQVKMSPSYHQSKGDLTGKKATSEPVLDPQQIQAFDQLCRLYRGSSRLAL
LTELSQNRSSESYRPFSGSQGGPAFNSIFQNENFQLQLIPPPVTED
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtgaaccagaccacgaaactgtggaccagagcctctatgccaagacggccgaa
gaagagctgaataagtctttcagtctagaagcttcactttcaaaattctcttacatagat
ttggacaaggaactggagttcaaaaacgatctgattgatgacaaggagtttgatattcct
caagttgacacgcctccaacactggaaagcatactaaatgagactgatgacgaagatgag
tcttttattcttgaggaccctacattgttaaacattgacactgttgattctcactcctat
gatacatcatctgtggcaagctcagatagtggtgacaggaccaacttaaaaaggaagaag
aaattacttgattctttttcactccatggatcagttatgcgacattcacttttgaaggga
atttctgcccagatagtgtctgcagctgacaaagtagatgctggcttgcctacagcaatt
gcagtgtccagtctgatagcagtgggtacatctcatggattggctttaatatttgatcag
aatcaagctttgcgactctgtctgggtagcactagtgttggaggtcagtatggcgccatc
tctgccctcagtatcaacaatgattgctcaagacttctctgtggctttgctaaaggacag
gtcaccatgtgggatttggccagtggaaaacttctaagatcaataacagatgctcatcct
ccaggaacagcaatattgcatatcaagtttacagatgatccaactctcgcaatttgcaat
gacagcggaggctctgtttttgaattgacatttaagagagtgatgggagtgagaacatgt
gaatctaggtgtctcttcagtggttctaagggtgaagtctgctgtattgagcctctgcat
tctaagcctgagttgaaagatcatcccatcacacagttttcattattggccatggcatcc
ttaacaaaaatactggtcattggattgaaaccatccttgaaagtgtggatgacttttccc
tatggccggatggacccttccagtgtgccattgctggcctggcactttgtagcagtacat
aattatgtgaatccaatgctcgccttctgcagaggagatgttgttcattttctgttggta
aagagagatgaatctggagcaatacatgttactaagcaaaagcatcttcacctatactat
gacctcatcaactttacttggataaattcccgcacagttgtgctcttagacagtgtagag
aagttgcatgtgattgatcggcaaacacaagaggagctggagacggtggagatctcagaa
gttcagctggtctacaacagtagccatttcaaatcactggccactggaggaaatgttagc
caggcactggctttggttggagagaaggcttgttatcaatccatcagtagctatggtggt
cagatcttttatttggggacaaaatctgtttatgtgatgatgctgaggagctggagagag
agagtggatcatctcctgaaacaagattgtcttacagaagccttggcccttgcatggtct
ttccatgaaggaaaagcaaaagcagttgtgggattatcaggggatgtcagcaagcgaaag
gttattgttgcagaccggatggtagaaatcctattccattatgcagatcgagctctgaaa
aagtgcccagaccaaggaaaaatccaagtgatggagcagcattttcaggatatggtgcct
gtcatagttgattattgccttctgctacagcgaaaggatcttttatttagtcaaatgtat
gataaattaagtgagaattcagtggccaaaggagtatttttggagtgccttgagccatat
attttaagtgacaaattggtgggaatcacgccccaagtaatgaaagacttgattgttcat
ttccaagataaaaaattaatggagaatgtggaagctctcattgtgcatatggatatcacc
agcctagatattcagcaggtagttctcatgtgttgggaaaatcgtttatacgatgctatg
atctatgtctacaacagaggcatgaatgagtttattagtccaatggagaaacttttcaga
gtcattgctccacctctgaatgcaggaaaaacgctaacagatgaacaagttgttatgggc
aataagcttcttgtatatattagctgttgtctggcaggtcgtgcctatccccttggtgac
atccctgaagatcttgttcccttggttaaaaaccaggtttttgaatttctaattcgcctg
cattcagcagaggcttctcctgaggaagaaatctatccttatattcggactttgctacat
tttgacacaagagaatttctaaatgtattggcactgactttcgaagattttaaaaatgac
aagcaagctgtggagtatcaacagcgaattgtggatattttgttgaaagttatggtggag
aattcagacttcaccccctcacaagtaggatgtctctttaccttccttgctcggcagctt
gcaaagcctgacaacaccttgtttgtaaacagaacactttttgatcaggtccttgaattc
ctttgtagtcctgacgatgattcccgacattctgaaagacagcaggtccttttagaattg
ctgcaggctggaggcatagttcagtttgaagagagtcgactcatccgtatggcagaaaaa
gctgagttctatcagatttgtgaatttatgtatgaacgagaacaccaatatgacaaaatt
attgattgctacttacatgaccctctgagagaggaggaagtcttcaattacattcacaat
atcttatccattcctggacatagtgccgaggagaagcagtctgtgtggcagaaagcaatg
gatcatattgaggaactggtggccctgaagccttgtaaagctgcggaactggttgctacc
cacttttctggacatattgaaacggtcattgaaaaacttcagaaccaggttttgcttttc
aaatttttgaggagtcttcttgacccaagggaaggtgttcatataaatcaagaattgctg
cccgtatctccctgcatcacagagcagttcatcgagctgttgtgtcagttcaacccaaac
caagttatagagactctgcgagtgcttgagtgctaccgtctggaagaaactattcagatt
actcagaagtatcagcttcatgaagtcactgcgtatctattggaaaagaaaggagatact
catggtgccttcttaataatgttagagagactacaaagcaaacttcaggagataacacat
caaggtgaaaataccaaagaggattcctccttgaaggatgttgaagatactatggtagag
accattgccctttgccagagaaattcccataatttgaaccagcagcaacgtgaggcactt
tggtttccattattggaggcaatgatggcccctcagaagctgcccagttcagctgtccct
catctacactctgaagctctgaaatctttaaccatgcaagttttaaacagcatggcagcc
ttcattgccttgccatcaatcttgcaaagaatcttacaggatccagtttatgggaaagga
aaacttggagaaatccagggacttattctgggaatgctggacacctttaactatgaacaa
accctgctggaaacaacaactagccttctcaaccaggatctccattggtcattatgcaac
ctgagagcttcggtcaccagaggcctgaaccccaaacaagattactgctctatctgtttg
cagcagtacaagagacgccaagaaatggctgatgaaattattgtctttagctgtggccat
ctgtatcactcattctgcctacaaagcaaagaatgcaccatggaaattgagggccagaca
agatggacgtgctacaaatgcagctcaagtaacaaagtaggaaaactcagtgaaaatgca
tctgaaattaaaaagggcaggataaccccctcacaggtaaaaatgtctccatcatatcat
cagtccaaaggggatctcactggtaaaaaggcaacctcagaacctgttctggatccacag
caaatccaagcatttgatcagctttgccgcctctaccgaggaagctccaggctggctctc
ctcacagaactctcccagaatcgcagcagcgagagctataggccattcagtggctcccag
ggcggtcctgctttcaacagcatcttccagaacgagaacttccagctgcagctcattccc
ccgcctgtgactgaggactga
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integrated database retrieval system
