Callithrix jacchus (white-tufted-ear marmoset): 100402829
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Entry
100402829 CDS
T03264
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03030
DNA replication
cjc03420
Nucleotide excision repair
cjc03430
Mismatch repair
cjc03440
Homologous recombination
cjc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100402829 (RPA1)
03420 Nucleotide excision repair
100402829 (RPA1)
03430 Mismatch repair
100402829 (RPA1)
03440 Homologous recombination
100402829 (RPA1)
03460 Fanconi anemia pathway
100402829 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjc03000
]
100402829 (RPA1)
03032 DNA replication proteins [BR:
cjc03032
]
100402829 (RPA1)
03400 DNA repair and recombination proteins [BR:
cjc03400
]
100402829 (RPA1)
Transcription factors [BR:
cjc03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
100402829 (RPA1)
DNA replication proteins [BR:
cjc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
100402829 (RPA1)
DNA repair and recombination proteins [BR:
cjc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
100402829 (RPA1)
MMR (mismatch excision repair)
100402829 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
100402829 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
Motif
Other DBs
NCBI-GeneID:
100402829
NCBI-ProteinID:
XP_002747872
Ensembl:
ENSCJAG00000001848
UniProt:
U3DXL0
LinkDB
All DBs
Position
5:complement(62437032..62498131)
Genome browser
AA seq
616 aa
AA seq
DB search
MVGQLSEGAIAVIMQQQDTSIKPMLQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLAT
QLNTLVEQGQLASNCVCQVNRFIVNTLKDGRRVVILMELEVLKSAEAVGVKIGNPVPYNE
GHGQQQVAPPPVPAASPASSKPQPQNGSSGVGSTLPKAYGASKTFGKAGGPSLSSTSGGT
QAKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESAEIRATAFNE
QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDHHLPTVQF
DFTGIDNLESKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATL
WGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKLRGWFDSEGQ
ALDGVSISDLKSGGLGGSSTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQA
CPTQDCNKKVIDQQNGLYRCEKCDTEFPSFKYRMILSVNIADFQENQWVTCFQESAEAIL
GQSAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYR
EYGRRLVQSIRRNASM
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggtcggccaactgagtgagggggccattgcggtcataatgcagcagcaggatacatcc
atcaaacccatgctccaggtcattaacatccgtcccatcaccacagggaacagtccgcca
cgttatcgactgctcatgagtgatggattgaacactttgtcatctttcatgttggccaca
cagttgaacactcttgttgaacaaggacaattggccagcaactgcgtttgccaggttaac
cgattcattgtgaacaccctgaaagacggaaggagagtagttattttgatggaattagaa
gttttgaaatcagctgaagcagttggagtgaagattggcaatccagtgccctataatgaa
ggacatgggcaacagcaggtggctcctcctccagttccagctgccagcccagctagcagc
aagccccagccacagaatggaagctcgggagtgggttccactcttcctaaggcttatggt
gcatcaaagacgtttggaaaagctggaggtcccagcctgtccagcacttccgggggaaca
caagccaaagtggtacccattgccagcctcaccccttaccagtccaagtggacgatttgt
gctcgtgtcaccaacaaaagtcagatccgtacctggagcaactcccgaggagaagggaag
ctgttctctctagaactagttgatgaaagtgctgaaatcagagctacggctttcaatgag
caagtggacaagttctttcccctcattgaagtgaacaaggtgtattatttctcaaagggc
accctgaagattgctaacaaacaattcacagctgttaaaaatgactatgagatgaccttc
aataatgagacttccgtcatgccctgtgaagatgatcatcacttgcctaccgttcagttt
gatttcacagggattgataacctagagagcaagtctaaagactcacttgtcgacataatt
gggatctgcaagagctatgaagatgccacgaaaatcacagtgaggtctaacaacagagag
gttgctaagaggaatatctacttgatggacacgtcggggaaggtggtgactgctacactg
tggggggaagatgctgataaatttgatggttccagacagcctgtgctggctatcaaagga
gccagagtctcagatttcggtggacggagcctctctgtgttgtcttccagcaccatcatc
gtgaatcctgacatcccagaggcctataagcttcgtggatggtttgactcagaaggacaa
gccttagatggcgtctccatctctgatctaaagagcggtggacttggagggagcagcacc
aactggaaaaccttgtatgaggtcaaatcagagaacctgggccaaggcgacaagccggac
tactttagctccgtggccacagtggtgtatcttcgcaaagagaactgcatgtaccaggcc
tgcccaactcaggactgcaataagaaagtgattgatcagcagaatggcttataccgctgt
gagaagtgcgacactgaattccccagtttcaagtaccgcatgatcctatcggtaaatatt
gcagattttcaagagaatcagtgggtgacttgtttccaggagtctgctgaagctatcctt
ggacaaagtgctgcctatcttggagaattaaaagacaagaatgaacaggcgtttgaagaa
gttttccagaatgccaacttccgatccttcatattccgagtcagggtcaaagtagagacc
tacaatgacgagtctcgaattaaggccactgtgatggatgtgaagcctgtggactacaga
gagtatggcagaaggctggtccagagcatccggagaaatgcatcaatgtga
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integrated database retrieval system
