Callithrix jacchus (white-tufted-ear marmoset): 100402996
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Entry
100402996 CDS
T03264
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04612
Antigen processing and presentation
cjc05145
Toxoplasmosis
cjc05152
Tuberculosis
cjc05164
Influenza A
cjc05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
100402996 (CIITA)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
100402996 (CIITA)
09171 Infectious disease: bacterial
05152 Tuberculosis
100402996 (CIITA)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
100402996 (CIITA)
09163 Immune disease
05340 Primary immunodeficiency
100402996 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cjc01001
]
100402996 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cjc04054
]
100402996 (CIITA)
Enzymes [BR:
cjc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
100402996 (CIITA)
Protein kinases [BR:
cjc01001
]
Serine/threonine kinases: Other
TAF1 family
100402996 (CIITA)
Pattern recognition receptors [BR:
cjc04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
100402996 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_8
LRR_14
LRR_9
Motif
Other DBs
NCBI-GeneID:
100402996
NCBI-ProteinID:
XP_054098607
Ensembl:
ENSCJAG00000015997
LinkDB
All DBs
Position
12:complement(15930681..15948975)
Genome browser
AA seq
1108 aa
AA seq
DB search
MELGPLEGSSYLELLNSNADPLHLYHLHDPMDLAGEEETELQSEPDTDTINCDQLSRLMR
YMEGDEETREAYASIAELDQYVFQDSQLEDPNKDIFIEHIGPDEVSERMETPAEVGQKKS
QKRPFPEELPADLKHWKPAEPPAVVTGSFLVGPVSNSSPLPCLLLPALFNQEPASSQTHL
EETHQMPMPFSISSLSCLNLPEGPVQFIPTLSTLSQGCWQISGAGTGVSSIFIYHSEVPQ
ASQPPSPSGPIVHGLPTSPDRPGSTSPFAPSATDLPSMPEPALTSRTNVTEHKMSPTQCQ
AAGEGSNKLPKWPESVEQFYRLLQETYQTEPAGPDGILVEADLVRAKLERSSSKSLEREL
ATPDWAERQLAHGGLAEVLLPARERRRPRETQVIAVLGKAGQGKSYWAGAVSRAWACGRL
PQYDFVFSVPCHCLNRPGDAYRLQDLLFSLGPRPLVADNEVFSHILKRPDRVLLILDAFE
ELEAQDGFLHSTCGPAPAEPCSLRGLLAGLFQRKLLRGCTLLLTTRPRGRLTQSLSKADA
LFELSGFSMEQAQAYVMRYFECSGKTEHQDRALALLRDQPFLLSHGHSPTLCQAVCQLSE
ALLELGEDAELPSTLTGLYVGLLGPAARDGPPGALAELAKLAWELGRRHQSTLREDHFPS
ADVRTWAVAKGLVQHPPGATASELAFCSFLLQCFLGAMWLALSGEIKDKELPQYLALTPR
KKRPYDNWLEGVPRFLAGLIFQPPTRCLGALVGPSAAALADKKQKVLAKYLKRLQPGTLR
ARQLLELLHCAHEAEEAGIWRHVVQELPARLSFLGTRLTPPDAHVLGKALEAAGQDFSLD
LRSTGIDPSGLGSLVGLSCVTHFRAALSDTVALWESLRQHGETKLLQAAEEKFTIEPFKA
KSLKDVEDLGKLVQTQRTRSSSEDTAGELPAVRDLKKLEFALGPVSGPRAFPKLVRILVA
FSSLQHLDLDALSENKIGDEGVSQLSATFPQLKSLETLNLSQNSITDVGACKLAEALPSL
AASLLRLSLYNNCICDVGAESLARVLPDMVSLRVMDVQYNKFTAAGAQQLAASLRKCPHV
ETLAMWTPTIPFSVQEHLQQQDSRISLR
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atggagttgggacccctagaaggcagcagttacctggaacttctcaacagcaatgctgac
cccctgcacctctaccacttacatgacccaatggacctggctggagaagaagagactgag
cttcaatcagaacctgacacggacaccatcaactgtgaccagctcagcaggctgatgcgc
tacatggaaggggatgaagagaccagggaggcttatgccagtatcgcggaactggaccag
tatgtgttccaggactcccagctggaggacccaaacaaagacattttcatagagcacata
ggaccagatgaagtcagtgagaggatggaaacgccggcagaagttgggcagaaaaaaagt
cagaaaagacccttcccagaggagcttcctgcagacctgaagcactggaagccagctgag
ccccccgctgtagtgactggcagttttctggtggggccagtgagcaactcctcccccctg
ccctgcctgctgttgcctgctctgttcaaccaggagccagcctccagccagactcacctg
gaagaaacccaccagatgcccatgcctttctccatttcctcattgagctgcctgaatctc
cctgagggacctgtccagttcatccccaccctatccactctgtcccaggggtgctggcaa
atctctggggctgggacaggagtctccagtatattcatctaccacagtgaggtgccccag
gccagtcaaccaccttctcccagtggacccattgtccacggcctcccgacatctccagac
cggccaggctccaccagcccctttgctccatcagccactgacctgcccagcatgcctgaa
cctgccctgacctcccgaacaaacgtgacagagcacaagatgtcccccacccaatgccag
gcagctggagagggctccaacaagcttccaaaatggcctgagtcagtggagcagttctac
cgcttgctgcaagaaacatatcagactgaacctgcaggcccggatggcatcctggtggag
gcggatctggtgcgtgccaagctggagaggagcagcagcaagagcctggagcgggaactc
gccacaccagactgggcagagcggcagctggcccatggaggcctggctgaggtgctgctg
cctgccagggaacgccggcggccgcgtgagacacaagtgattgctgtgctgggcaaggct
ggtcagggcaagagctattgggctggggcagtgagccgggcctgggcttgtggccggctt
ccccagtacgacttcgtcttctctgtcccctgccactgcttgaaccgtccaggcgatgcc
taccgcctgcaggacctgctcttctccctgggcccacggccactcgtggcagacaatgag
gtcttcagccacatcttgaagaggcctgaccgcgttctgctcatcctagacgcctttgag
gagctggaagcacaagatggcttcctgcacagcacttgcggaccggcgcccgcagagccc
tgctccctgcgagggctgctggccggccttttccagaggaagctgctccgaggctgcacc
ctcctcctcaccacccggcctcggggccgcctgacccagagcctgagcaaggccgatgcc
ctgtttgagctctccggcttctccatggagcaggcccaggcctatgtgatgcgatacttt
gagtgctcagggaagaccgagcaccaagacagagccctggcgctcctccgggaccagcca
tttctcctcagtcatggccacagccccactttgtgccaggcagtgtgccagctctcagag
gccctgctggagctgggggaggacgccgagctgccctccacactcacggggctctatgtc
ggcctgctgggccctgcagcccgcgacggtcccccaggggccctggcagagctggccaag
ctggcctgggagctgggccgtagacaccaaagtaccctacgggaggaccacttcccatcc
gcagacgtgaggacctgggcagtggccaaaggcttagtgcagcacccgccgggggccaca
gcgtccgagctggccttctgcagcttcctcctgcagtgcttcctgggggccatgtggctg
gctcttagcggcgaaatcaaggacaaggagctcccgcagtatctagcattgacccccagg
aagaagaggccttatgacaactggctggagggcgtgccacgctttctggcagggctgatc
ttccagcctcccactcgctgcctgggagccctggttgggccatcggcggctgctttggca
gacaagaagcagaaagtgcttgcgaagtacctgaagcggctgcagccggggacactgcgg
gctcgtcagctgctggagctgctgcactgcgcccacgaggccgaggaggctgggatctgg
cggcacgtggtgcaggagctccccgcccgcctctcgtttctgggcacccggctcacacct
cctgatgcacatgtattgggcaaggccttggaggcggcaggccaagacttctccctggat
ctccgcagcactggcattgacccctcgggattggggagcctcgtgggactcagctgtgtc
acgcatttcagggctgccttgagtgacacagtggcgctgtgggagtccctgcggcagcat
ggggagaccaagctacttcaggcagcagaggagaagttcaccattgagcctttcaaagcc
aagtccttgaaggatgtggaagacctgggaaagctcgtgcagactcagaggacgagaagt
tcctcagaagacacagctggggagctccctgctgttcgggacctaaagaaactggagttt
gcgctgggccctgtctcaggcccccgggctttccccaaactggtgcggatcctcgtggcc
ttttcctccctgcagcatctggacctggatgcactgagcgagaacaagatcggggacgag
ggtgtctcgcagctctcagccaccttcccccagctgaagtccctggaaaccctcaactta
tcccagaacagcatcactgacgtgggtgcctgcaaacttgcggaggccctgccttcactc
gcggcatccctgctcaggctaagcttgtacaataactgcatctgcgacgtgggtgccgag
agcctggctcgtgtgcttcctgacatggtgtccctccgggtgatggacgttcagtacaac
aagttcacggccgccggggcccagcagctcgccgccagccttcggaagtgccctcacgtg
gagactctggcgatgtggacgcccaccatcccattcagtgtccaggaacacctacagcag
caggactcacgaatcagcctgagatga
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integrated database retrieval system
