Callithrix jacchus (white-tufted-ear marmoset): 100403007
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Entry
100403007 CDS
T03264
Symbol
VLDLR
Name
(RefSeq) very low-density lipoprotein receptor isoform X1
KO
K20053
very low-density lipoprotein receptor
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc05017
Spinocerebellar ataxia
cjc05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
100403007 (VLDLR)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
100403007 (VLDLR)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cjc04131
]
100403007 (VLDLR)
Membrane trafficking [BR:
cjc04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
100403007 (VLDLR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
EGF
hEGF
DUF4010
Motif
Other DBs
NCBI-GeneID:
100403007
NCBI-ProteinID:
XP_002742941
Ensembl:
ENSCJAG00000010772
UniProt:
F7HHP9
LinkDB
All DBs
Position
1:106028533..106067338
Genome browser
AA seq
873 aa
AA seq
DB search
MGTSARWALWLLLALCWGPRESCATGTGRKAKCEPSQFQCTNGRCITLLWKCDGDEDCVD
GSDEKNCVKKTCAESDFVCNNGQCVPSRWKCDGDPDCEDGSDETPEQCHMRTCRINEISC
GAHSTQCIPVSWRCDGENDCDSGEDEENCGNITCSPDEFTCSTGRCISRNFVCNGQDDCS
DGSDELDCAPPTCGTHEFQCSTSSCIPISWVCDDDADCSDQSDESLEQCGRQPVIHTKCP
ASEIQCGSGECIHKKWRCDGDPDCKDGSDEVNCPSRTCRPDQFECEDGSCIHGSRQCNGI
RDCVDGSDEVNCKNVNQCLGPGKFKCRSGECIEISKVCNQEQDCRDWSDEPLKECHVNEC
LVNNGGCSHICKDLVVGYECDCAAGFELIDRKTCGDIDECQNPGICSQICINLKGGYKCE
CSRGYQMDLATGVCKAVGREPSLIFTNRRDIRKIGLERKEYIQLVEQLRNTVALDADIAA
QKLFWADLSQKAIFSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYWTDAASKTISVA
TLDGTKRKFLFNSDLREPASIAVDPLSGFVYWSDWGEPAKIEKAGMNGFDRRPLVTVDIQ
WPNGITLDLIKSRLYWLDSKLHMLSSVDLNGQDRRIVLKSLEFLAHPLALTIFEDRVYWI
DGENEAVYGANKFTGLELATLVNNLNDAQDIIVYHELVQPSGKNWCEEDRENGGCEYLCL
PAPQINDHSPKYTCSCPSGYNLEENGRDCQSTATTVTYSETKDTNTTEISPTSGLVPGGI
NVTTAVSEVSVPPKGTSAAWAILPLLLLVMAAVGGYLMWRNWQHKNMKSMNFDNPVYLKT
TEEDLSIDIGRHSASVGHTYPAISVVSTDDDLA
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggcacgtccgcgcgctgggcgctctggctgctgctcgcgctgtgctgggggccccgg
gagagctgcgccaccggaaccgggagaaaagccaagtgtgagccctcccaattccagtgc
acaaatggtcgctgtattaccctgttgtggaaatgtgatggagacgaagactgtgttgac
ggcagtgatgaaaagaactgtgtaaagaagacatgtgccgaatctgacttcgtgtgcaac
aatggccagtgcgttcccagccgttggaagtgtgatggagatcctgactgtgaagatggt
tcagatgaaaccccagaacagtgccatatgagaacatgccgcataaatgaaatcagctgt
ggcgcccattctactcagtgtatcccagtgtcctggagatgtgatggtgaaaatgattgt
gacagtggagaagatgaagaaaactgtggtaacataacatgtagccctgatgagttcacc
tgctccactggccgctgcatctccaggaactttgtatgcaatggccaggatgactgcagc
gatggcagcgatgagctggactgtgccccgccaacctgtggcacccatgagttccagtgc
agcacctcctcctgcatccccatcagctgggtgtgcgatgatgatgcagactgctccgac
caatctgatgagtccctggagcagtgtggccgccagccagttatacacaccaagtgccca
gccagcgagatccagtgcggctctggcgagtgcatccataagaagtggcgatgcgacggg
gaccctgactgcaaggatggcagtgatgaggtcaactgtccctctcgaacttgcagacct
gaccagtttgaatgtgaggatggcagctgcatccatggtagcaggcagtgtaatggtatc
cgagactgtgttgacggttccgatgaagtcaactgcaaaaatgtcaatcagtgcttgggc
cctggaaaattcaagtgcagaagtggagaatgcatagagatcagcaaagtgtgtaaccag
gagcaggactgcagggactggagcgatgagcccctgaaagaatgtcatgtaaatgaatgc
ttggtaaataatggtggatgttcccatatctgcaaagacctagttgtaggctacgagtgt
gactgtgcagctgggtttgaactgatagataggaaaacctgtggagatattgatgaatgc
caaaatccgggaatctgcagtcaaatttgtatcaacttaaaaggtggttacaagtgtgaa
tgtagtcgtggctatcaaatggatcttgccactggcgtgtgcaaggcagtaggcagagag
ccaagtctgatctttactaatcgaagagacatcaggaagattggcttagagaggaaagaa
tatatccaactagttgaacaactaagaaacacggtggctcttgatgctgacattgctgct
cagaaactattttgggccgatctaagccaaaaggccatcttcagtgcctcaattgatgac
aaggttggtagacatgttaaaatgatcgacaatgtctataatcctgcagccattgctgtt
gattgggtgtacaagaccatctactggactgatgcggcttctaagactatttcagtagct
accctagatggaaccaagaggaagttcctgtttaactcggacttgcgagagcctgcctcc
atagctgtggatccactctctggctttgtttactggtcagactggggtgaaccagctaaa
atagaaaaagcaggaatgaatggatttgatagacgtccgctggtgacagtggatatccag
tggccaaacggaattacactggaccttataaaaagccgcctctattggcttgattctaag
ttgcacatgttatccagcgtggacttgaatggccaagatcgtaggatagtactaaagtct
ctggagttcctagctcatcctcttgcactaacaatatttgaggatcgtgtctactggata
gacggggaaaatgaagcagtctatggtgccaataaattcactggattggagctagccact
ctagtcaacaaccttaatgatgcccaagacatcattgtctatcatgaacttgtacagcca
tcaggtaaaaattggtgtgaagaagacagggagaatggaggatgtgaatacctatgcctg
ccagcaccacagattaatgatcactctccaaaatatacctgttcctgtcccagtgggtac
aatctagaggaaaatggccgagactgccaaagtactgcaactactgtgacttacagtgag
acaaaagatacgaacacaacagaaatttcaccaactagtggactagttcctggagggatc
aatgtgaccacagcagtatcagaagtcagtgttcccccaaaagggacttctgctgcatgg
gccattcttcctctcttgctcttagtgatggcagcagtaggtggctacttgatgtggcgg
aattggcaacacaagaatatgaaaagcatgaactttgacaatcctgtgtacttgaaaacc
actgaagaggacctctccatagacattggtagacacagtgcttctgttggacacacgtac
ccagcaatatcagttgtaagcacagatgatgatctagcttga
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