Callithrix jacchus (white-tufted-ear marmoset): 100403133
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Entry
100403133 CDS
T03264
Symbol
ABCA1
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc02010
ABC transporters
cjc04148
Efferocytosis
cjc04975
Fat digestion and absorption
cjc04979
Cholesterol metabolism
cjc05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
100403133 (ABCA1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
100403133 (ABCA1)
09150 Organismal Systems
09154 Digestive system
04975 Fat digestion and absorption
100403133 (ABCA1)
04979 Cholesterol metabolism
100403133 (ABCA1)
09160 Human Diseases
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
100403133 (ABCA1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cjc02000
]
100403133 (ABCA1)
Transporters [BR:
cjc02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
100403133 (ABCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
100403133
NCBI-ProteinID:
XP_035109443
Ensembl:
ENSCJAG00000016653
LinkDB
All DBs
Position
1:complement(150090341..150246555)
Genome browser
AA seq
2263 aa
AA seq
DB search
MACWPQLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFLILISVRLSYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGEAPGVVGNFNKSIVSRLFSDARRLLLYSQKDT
SMKDMRKVLRTLQQIKNSGSNLKLQDFLADNETFSGFLYHNLSLPRSTVDKMLRADVTLH
KVFLQGYQLHLTSLCNGSKLQEMIQLGDQEAAELCGLPREKLAAAERVLRSNMDILKPIL
KGLNSTSPLPGKELAEATKTLLHSLGTLAQELFSMRSWSDMRQEVMFLTNVNSSSSSTQI
YQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGGNGTEEDAETFYDNSTTPYCNDLMK
NLESSPLSRIIWKALKPLLVGKILYTPDTPATRQVMAEVNKTFQELAVFHDLEGMWEELS
PKIWTFMENSQEMDLVRMLLDSRSNDYFWEQQLDGLDWTAQDIVAFLAKHPEDVQSSNGS
VYTWREAFNETNQAIRTISRFMECVNLNKLEPIATEVRLINKSMELLDERKFWAGIVFTG
ITPGSIELPHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYIWGGFAYLQDVV
EQGIIRVLTGTEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIV
YEKEARLKETMRIMGLDNGILWFSWFISSLVPLLVSASLLVVILKLGNLLPYSDPSVVFV
FLSVFAVVTILQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFTLKIFAS
LLSPVAFGFGCEYFALFEEQGIGVQWDNLFESPVEGDGFNLTTSVSMMLFDTFLYGVMTW
YIEAVFPGQYGIPRPWYFPCTKSYWFGEESDEKSHPGSSPKRMSEICMEEEPTHLKLGVS
IQNLVKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYIL
GQDIRSEMSTIRQNLGVCPQHNVLFNMLTVEEHIWFYARLKGLSEKHVKAEMKQMALDVG
LPSSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQ
GRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESSLS
SCRNSSSTVSYLKKVVPELPPAGQSGGRGGEVQRLVALTQDVSAISNLIRKHVSEARLVE
DIGHELTYVLPYEAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVAEESGVD
AETSDGTLPARRNRRAFGDKQSCLRPFTEDDAVDPNDSDIDPESRETDLLSGMDGKGSYQ
VKGWKLTQQQFVALLWKRLLIARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLE
LQPWMYNEQYTFVSNDAPEDMGTLELLNALTKDPGFGTRCMEGNPIPHMPCLVGEEEWTT
APVPQTITDLFQKGNWTMQNPSPTCQCSSDKIKKMLPVCPPGAGGLPPPQRKQNTADILQ
DLTGRNISDYLVKTYVQIIAKSLKNKIWVNEFRYGGFSLGVSNSHALPPSGEVNDAIKQM
KKHLKLAKDSSADRFLNSLGRFMTGLDTKNNVKVWFNNKGWHAISSFLNVINNAILRANL
QKGENPSHYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQ
ERVSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVIIIFICFQQKSYVSSTNLPVL
ALLLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTDNKLNN
INDILKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFVSPLSWDLVGRNLFAMAV
EGVVFFLITVLIQYRFFIRPRPVNAKLPPLNDEDEDVRRERQRILDGGGQNDILEIKELT
KIYRRKRKPAVDRICVGIPPGECFGLLGVNGAGKSTTFKMLTGDTTVTKGDAFLNKNSIL
SNIHEVHQNMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYG
EKYAGNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSVVKEGRSVV
LTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGSNPDLKPVQDF
FGLAFPGSVLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLHIEDYSVSQTTLDQVFV
NFAKDQSDDDHLKDLSLHKNQTVVDVAVLTSFLQDEKVKESYV
NT seq
6792 nt
NT seq
+upstream
nt +downstream
nt
atggcttgttggcctcagctgaggttgctgctgtggaagaacctcactttcagaagaaga
caaacatgtcagctgctgctggaagtggcctggcctctatttatcttcctgatcctgatc
tctgttcggctgagctatcctccctatgaacaacatgaatgccactttccaaataaagcc
atgccctctgcaggaacacttccttgggttcaggggattatctgtaatgccaacaatccc
tgtttccgttacccaactcctggggaggctcctggagttgttggaaactttaacaaatcc
attgtgtctcgcctgttctcagatgctcggaggcttcttttatatagccagaaagacacc
agtatgaaggacatgcgtaaagtcctgagaacattacagcagatcaagaattccggctca
aacttaaagcttcaggattttctggcggacaatgaaaccttctctgggttcctgtatcac
aacctctctctcccgaggtctaccgtggataagatgctgagggctgatgtcactctccac
aaggtatttttgcaaggctaccagttacatttgaccagtctgtgcaatgggtcaaaatta
caagagatgattcaacttggtgaccaagaagctgcggagctttgtggcctaccaagggag
aagctggctgcagcagagcgagtacttcgttccaacatggacatcctgaagccgatcctg
aaaggactaaactctacatctcccctcccgggcaaggagctggctgaagccacaaaaaca
ttgttgcatagtctggggactctggcccaggagctgttcagcatgaggagctggagtgac
atgcgacaggaggtgatgtttctgaccaatgtgaacagctccagctcctccacgcaaatc
taccaggctgtgtctcgtattgtctgtgggcatcccgagggaggggggctgaagatcaag
tctctcaactggtatgaggacaacaactacaaagcgctctttggcggcaatggcactgag
gaagatgctgaaaccttctacgacaactctacaactccttactgcaatgatttgatgaag
aatttggagtctagtcctctttcccgcattatttggaaagctctgaagcctctgcttgta
gggaagatcctgtatacacctgacactccagccacgaggcaggttatggctgaggtgaac
aagaccttccaggaactggctgtattccacgatctggaaggcatgtgggaagaactcagc
cccaagatctggaccttcatggagaacagccaagaaatggaccttgtccggatgctgttg
gacagcaggagcaatgactacttttgggaacagcagttggatggcttagactggacagcc
caagacattgtggcgtttttggccaagcacccagaggatgtccagtccagtaatggttct
gtgtacacctggagagaagctttcaacgagactaaccaggcaatccggaccatatctcgc
ttcatggagtgtgtcaacctgaacaagctggaacccatagcaacagaggtccggctcatc
aacaagtccatggagctgctggatgagaggaagttctgggctggcattgtgttcactgga
attactccaggcagcattgagctgccccatcatgtcaagtacaagatccgaatggacatt
gacaatgtggagaggacaaataaaatcaaggatgggtactgggaccctggtcctcgagct
gacccgtttgaggatatgcggtacatctgggggggtttcgcctacttgcaggatgtggtg
gagcaaggaatcatcagggtgctgaccggcactgagaagaaaactggtgtctatgtgcag
cagatgccctatccctgttatgttgatgacatctttctgcgggtgatgagccgctcaatg
cccctcttcatgacactggcctggatttactcagtggctgtgatcatcaagggcattgtg
tatgagaaggaggcgcggctgaaagagaccatgcggatcatgggcctggacaacggcatc
ctctggtttagctggttcatcagtagcctcgttcctcttcttgtgagcgctagcctgctg
gtggtcatcctgaagttaggaaacctgctgccctacagtgaccccagcgtggtgtttgtc
ttcctgtctgtgtttgctgtggtgaccatcctgcagtgcttcctgattagcacactcttc
tccagagccaacctggcagcagcctgtgggggcatcatctacttcacactgtacctgccc
tacgtcctctgcgtggcatggcaggactacgtgggcttcacactcaagatctttgctagc
ctgctgtctcccgtggcttttgggtttggctgtgagtactttgccctttttgaggagcag
ggcattggagtgcagtgggacaacctgtttgagagtcctgtggagggagatggcttcaat
ctcaccacttcggtctccatgatgctctttgacaccttcctctatggggtgatgacttgg
tacatcgaggctgtctttccaggccagtatggaattcccaggccctggtattttccttgc
accaagtcctactggtttggtgaggaaagtgatgagaagagccaccctggttccagccca
aagagaatgtcagaaatctgcatggaggaggaacccacccacctgaagctgggcgtgtcc
attcagaacctggtaaaagtctaccgagatggcatgaaggtggctgttgatggcctggcg
ctgaatttttatgagggccagatcacctccttcctgggtcacaatggagcggggaagacc
accaccatgtcaatcctgaccgggttgttccccccaacctccggcactgcctacatcctg
ggacaagacattcgctctgagatgagcaccatccggcagaacctaggggtctgtccccag
cataacgtgctgtttaacatgttgactgttgaagaacacatctggttctatgcccgcctg
aaagggctctcagagaagcacgtgaaggcggagatgaagcagatggctctggatgttggt
ttgccatcaagcaagctgaaaagcaagacaagccagctgtcaggtggaatgcagagaaag
ctgtctgtggccttggcctttgttgggggatccaaggttgtcattctggatgaacccaca
gctggtgtggacccttactcccgcaggggaatatgggagctgctgctgaaataccgacaa
ggccgcaccattattctctccacacaccacatggatgaagcggacatcctgggggacagg
attgccatcatctcccatgggaagctgtgctgtgtgggctcctccctgtttctgaagaac
cagctgggaacaggctactacctgaccctggtcaagaaagacgtggaatcctcccttagt
tcctgcagaaacagtagtagcacggtgtcgtacctgaaaaaggtggtgcctgagcttccc
ccagctgggcagagtggaggcagaggaggagaggtgcagaggctggtggcgctgactcaa
gatgtctctgctatctccaacctcatcaggaagcatgtgtctgaagcccggctggtggaa
gacatagggcatgagctgacctacgtgctgccatatgaagctgctaaggagggggccttt
gtggaactctttcatgagattgatgaccggctctcagacctgggcatttctagttatggc
atctcagagacgaccctggaagaaatattcctcaaggtggccgaagagagtggggtggat
gctgagacctcagatggtaccctgccagcaagacgaaacaggcgggccttcggggacaag
cagagctgtctgcgcccgttcactgaagacgatgctgttgatccaaatgattctgacata
gatccagaatccagagagacagacttgctcagtgggatggatggcaaaggctcctaccag
gtgaagggctggaaactcacacagcaacagtttgtagcccttttgtggaagagactgcta
attgccagacggagtcggaaaggattttttgctcagattgtcttgccagctgtgtttgtc
tgcattgcccttgtgttcagcctgatcgtgccaccctttgggaagtaccccagcctggaa
cttcagccctggatgtacaatgaacagtacacttttgtcagcaacgatgctcctgaagac
atgggcaccctggaactcttaaatgccctcacgaaagaccctggcttcggaacccgctgt
atggaaggaaacccaatcccacacatgccctgcctggtaggggaggaagagtggaccacc
gcaccggttccccagaccatcacggacctcttccagaaggggaactggacgatgcagaac
ccttcacccacgtgccagtgtagcagtgacaaaatcaagaagatgctgcccgtgtgtccc
ccaggggcaggggggctgcctcctccacagagaaagcaaaacaccgcagacatccttcag
gacctgacgggaagaaacatttcagattatctggtgaagacgtatgtgcagatcatagcc
aaaagcttaaagaacaagatttgggtgaatgagtttcggtatggcgggttttccctgggt
gtcagtaattctcatgcacttcctccgagtggagaagttaatgatgccatcaaacaaatg
aagaaacacctgaagctggccaaggacagttctgcagatcgatttctcaacagcctggga
aggtttatgacaggactggacaccaaaaataacgtcaaggtgtggttcaataacaagggt
tggcatgcaatcagctctttcctgaatgtcatcaacaatgctattctccgggccaacctg
caaaagggagagaatcctagccattatgggattactgctttcaatcatcccctgaatctc
accaagcagcagctctcagaggtggctctgatgaccacatcagtggatgtccttgtgtcc
atctgcgtcatctttgcaatgtccttcgtcccagctagctttgtcgtattcctgatccag
gagcgggtcagcaaagcaaaacacctgcagttcatcagtggagtgaagcctgtcatctac
tggctgtctaattttgtctgggatatgtgcaattacgttgtccctgccacactggtcatt
atcatcttcatctgcttccagcagaagtcctatgtgtcctccaccaatctgccagtgtta
gcccttctacttttgctgtatgggtggtcgatcacacctctcatgtacccagcctccttc
gtgttcaagatccccagcacagcctatgtggtgctcaccagcgtgaacctcttcatcggc
atcaatggcagtgtggccacctttgtgctggagctcttcactgacaataagctgaataat
atcaatgatatcctgaagtctgtgttcttgatcttcccacatttttgcctgggacgaggg
ctcattgacatggtgaaaaaccaggcaatggctgatgccctggaaaggtttggagagaat
cgttttgtgtcaccattatcttgggacttggtgggacgaaacctcttcgccatggccgta
gaaggggtggtgttcttcctcattactgttctgatccagtacagattcttcatcaggccc
agacctgtaaatgcaaagcttcctcctctgaatgatgaagatgaagatgtgaggcgggaa
agacagagaattcttgatggtggaggccagaatgacatcttagaaatcaaggagttgaca
aagatatacagaaggaagcggaagcctgctgtggacaggatttgtgtgggcattcctcct
ggtgagtgctttggactcctgggagttaatggggctggaaaatcaacaacttttaagatg
ttaacaggagataccactgtgaccaaaggagatgctttcctcaacaaaaatagtatctta
tcaaacatccatgaagtacatcagaacatgggatactgccctcagtttgatgccatcaca
gagctgctgactgggagagagcacgtggagttctttgccctgttgagaggagtaccagag
aaagaagttggcaaggttggtgagtgggcaatccggaaactgggcctcgtgaagtatgga
gaaaaatacgctggtaactacagtggaggcaacaagcgcaagctctctacagccatggct
ttgattggcgggcctcctgtggtgtttctggatgaacccaccacaggcatggatcccaaa
gcccggcggttcttgtggaattgcgccctaagtgttgtcaaggaggggagatcagtagtg
cttacatctcatagtatggaagaatgtgaagctctttgcactaggatggcaattatggtc
aatggaaggttcaggtgccttggcagtgtccaacatctgaaaaataggtttggagatggt
tatacaatagttgtacgaatagcaggctccaaccctgacctgaagcctgtccaggatttc
tttggacttgcctttcctggaagtgttctaaaagagaaacaccggaacatgctacaatac
cagcttccatcttcgttatcttctctggctaggatattcagcatcctctcccagagcaaa
aagcgactccacatagaagactactctgtttctcagacaacacttgaccaggtatttgtg
aactttgccaaggaccaaagtgatgatgaccacttaaaggacctctcattacacaaaaac
cagacagtagtagatgttgcagttctcacatcttttctacaggatgagaaagtgaaagaa
agttatgtatga
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integrated database retrieval system
