Callithrix jacchus (white-tufted-ear marmoset): 100403209
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Entry
100403209 CDS
T03264
Symbol
SORT1
Name
(RefSeq) sortilin isoform X4
KO
K12388
sortilin
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04142
Lysosome
cjc04722
Neurotrophin signaling pathway
cjc04979
Cholesterol metabolism
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
100403209 (SORT1)
09150 Organismal Systems
09154 Digestive system
04979 Cholesterol metabolism
100403209 (SORT1)
09156 Nervous system
04722 Neurotrophin signaling pathway
100403209 (SORT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
BNR_6
BNR
Motif
Other DBs
NCBI-GeneID:
100403209
NCBI-ProteinID:
XP_017830485
Ensembl:
ENSCJAG00000002962
LinkDB
All DBs
Position
7:complement(144472256..144560324)
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AA seq
830 aa
AA seq
DB search
MERPRGAAAVLLRWPHGLGLFLLLQLLPLATFGQDRLDAPPPPAAPLLRWSGPIGVSWGL
RAAAAGGAFPRGGRWRRSAPGEDEECGRVRDFVAKLANNTHQHVFDDLRGSVSLSWVGDS
TGVILVLTTFHVPLVIMTFGQSKLYRSEDYGKNFKDITNLINNTFIRTEFGMAIGPENSG
KVVLTAEVSGGSRGGRIFRSSDFAKNFVQTDLPFHPLTQMMYSPQNSDYLLALSTENGLW
VSKNFGGKWEEIHKAVCLAKWGSDSTIFFTTYANGSCTDLGALELWRTSDLGKSFKTIGV
KIYSFGLGGRFLFASVMADKDTTRRIHVSTDQGDTWSMAQLPSVGQEQFYSILAANDDMV
FMHVDEPGDTGFGTIFTSDDRGIVYSKSLDRHLYTTTGGETDFTNVTSLRGIYITSVLSE
DNSIQTMITFDQGGRWKHLRKPENSECDATAKNKNECSLHIHASYSISQKLNVPMAPLSE
PNAVGIVIAHGSVGDAISVMVPDVYISDDGGYSWTKMLEGPHYYTILDSGGIIVAIEHSS
RPINVIKFSTDEGQCWQTYTFTRDPIYFTGLASEPGARSMNISIWGFTESFLTSQWVSYT
IDFKDILERNCEEKDYTIWLAHSTDPEDYEDGCILGYKEQFLRLRKSSVCQNGRDYVVTK
QPSICLCSLEDFLCDFGYYRPENDSKCVEQPELKGHDLEFCLYGREEHLTTNGYRKIPGD
KCQGGVNPVREVKDLKKKCTSNFLSPEKQNSKSNSVPIILAIVGLMLVTVVAGVLIVKKY
VCGGRFLVHRYSVLQQHAEANGVDGVDALDTASHTNKSGYHDDSDEDLLE
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atggagcgaccccgaggagctgcggccgtcctcctgcgctggccccacggcctcggcctc
tttcttctcctgcagctgctgccgcttgcgaccttcggccaggaccggctggacgcgccg
ccgccgcctgctgcgccgctgctgcgctggtccggccccattggggtgagctgggggctg
cgggcggcggcggccgggggcgcgtttccccgcggcggccgttggcgtcgcagcgcgccc
ggcgaggacgaggaatgcggccgggtccgggatttcgtcgccaagctggccaacaacacg
caccagcatgtgtttgatgatctcagaggctcagtatccttgtcctgggttggagatagc
actggggtcattctagtcttgactaccttccatgtaccactggtaattatgacttttgga
cagtccaagctgtatcgaagtgaggattatggcaagaactttaaggatattacaaatctc
atcaataacacctttattcggactgaatttggcatggctattggtcctgagaactctgga
aaggtggtattaacagcagaagtatctggaggaagtcgtggaggaagaatcttcagatca
tcagattttgcgaagaattttgtgcaaacagatctcccttttcatcctctcactcagatg
atgtatagccctcagaattctgactatcttttagctctcagcactgaaaatggcctgtgg
gtgtccaagaattttgggggaaaatgggaagaaatccacaaagcagtatgtttggccaaa
tggggatcagacagcaccatcttctttaccacctatgcgaatggctcctgcactgacctt
ggggctctggaattatggagaacttcagacttggggaaaagcttcaaaactattggcgtg
aaaatctactcatttggtcttgggggacgtttcctttttgcctctgtgatggctgataag
gatacaacaagaaggatccacgtttcaacagatcaaggggacacgtggagtatggcccaa
ctcccctctgtggggcaggaacagttctattctattctggcagcgaatgatgacatggta
ttcatgcatgtagatgaacctggagacactgggtttggcacaatctttacctcagatgat
cgaggcattgtctattccaagtctttggaccgacatctctacactacgacaggcggagaa
acggactttaccaatgtgacctccctccgaggcatctacataacaagcgtgctctccgaa
gataattctatccagaccatgattacttttgaccaaggaggaaggtggaagcacctgagg
aagcctgaaaacagtgaatgtgatgccacagcaaaaaacaagaatgagtgcagccttcat
attcatgcttcatacagcatctcccagaaactgaatgttccaatggccccactctcagag
ccgaatgctgtaggcattgtcattgctcatggtagcgtgggggatgccatctcagtgatg
gtcccagatgtgtacatctcagatgacgggggttactcctggacaaagatgctggaagga
ccccactattacaccatcctggattctggaggcatcattgtggccattgagcacagcagc
cgtcctatcaatgtgattaagttctccacagacgaaggtcagtgctggcaaacctacaca
ttcaccagggaccccatctatttcactggcctagcttcagaacctggagctaggtccatg
aatatcagcatctggggcttcacagaatctttcctgaccagccagtgggtctcctacacc
attgattttaaagatatccttgaaaggaactgtgaagagaaggactataccatatggctg
gcacactccacagaccctgaagattatgaagatggctgcattttgggctataaagaacag
tttctgaggctacgcaagtcatccgtgtgtcagaatggtcgagactatgttgtgaccaag
cagccctccatctgcctctgttccctggaggactttctctgtgattttggctactaccgt
ccagaaaatgactccaagtgtgtggagcagccagaactgaagggccacgacctggagttt
tgtctgtatggaagagaagaacacctaacaacaaatgggtaccggaaaattccaggggac
aaatgccagggtggggtaaatcctgttcgagaagtaaaagacttgaaaaagaaatgcaca
agcaactttttgagtccggaaaagcagaattccaagtcaaattctgttccaattatcctg
gccatcgtgggactgatgctggtcacagttgtagcaggagtgctcattgtgaagaaatat
gtctgtgggggaaggttcctggtgcatcgctactctgtgctgcagcagcacgcagaggcc
aacggcgtggacggtgtggatgctttggacacagcctcccacactaataaaagtggttat
catgatgactcagatgaggacctcttggaatag
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