Callithrix jacchus (white-tufted-ear marmoset): 100403415
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Entry
100403415 CDS
T03264
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX18-like
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cjc03041
]
100403415
03009 Ribosome biogenesis [BR:
cjc03009
]
100403415
Enzymes [BR:
cjc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100403415
Spliceosome [BR:
cjc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
100403415
Ribosome biogenesis [BR:
cjc03009
]
Eukaryotic type
90S particles
Helicases
100403415
Pre-60S particles
100403415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
ERCC3_RAD25_C
AAA_19
Cullin_Nedd8
Motif
Other DBs
NCBI-GeneID:
100403415
NCBI-ProteinID:
XP_035144224
LinkDB
All DBs
Position
X:complement(68374996..68396413)
Genome browser
AA seq
674 aa
AA seq
DB search
MSHLPMKLLRRKIEKWNLKLRQQNLKLQQWNLKLQGASNLTLSETENGDVSEETMGGRKV
KKIKXHSMNVGFSEAQNGDVSQEAVENIKVXKSPQKSIVLTNGEGAMQSPNSESKKKKRK
VVNDAGPDTKKAKTGNQGESEEXSAKTRKETENNVEKPDNDEDDSEGPSLPLGLTRAFED
TSFASLCNLVNENTLKARKEMGFINMTEIQHKSIRPLLEGRNLLAAAKTGSGKTLAFLIP
AVELIVKLKFMPRSETGVLILSPTRKLAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ
KLANGINIIVATPGCLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEGELKQIIKLLPT
RRQTTLFSATQIQKVEDLARISLKKKPLYVGVDDDKANATVDGLEQGYVVGPTEKRFPLL
FTFLKKNRKKKFVVFFSSSMSVKYHYELLNYIDLPILAIHGKQKQNKRTTTFFQFCNADS
GTLFCTDVAARGLDIPEADWIVQYDPPDDPKEYIHRVGRTARGLNGRGPALLILRPEELG
FLHYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLRKSAQEAYKLYICAYDSHSLK
QIFNVNNLNLPQVALSFGFKVPPFVDLNINSNEGKQKKRGGGGGFGYQKTKKVEKSKIFK
HISKKSPDSRQFSH
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacctgccaatgaaactcctgcgcaggaagatcgagaagtggaacctcaaattg
cggcagcagaacctaaagttgcagcagtggaacctaaagttgcagggggcctcaaatctg
accctatcagaaactgaaaatggagatgtgtctgaagaaacaatgggaggtagaaaggtt
aaaaaaatcaaannacattctatgaatgtgggcttctcagaagctcaaaatggagatgtg
tctcaagaagcagtggaaaatataaaagtttaaaaatctccccagaaatccatcgtctta
accaatggagaaggagcaatgcagtctcccaattcagaatcgaagaagaaaaagagaaaa
gtggtgaatgatgctgggcctgacacaaaaaaagcaaaaactggaaaccaaggggaatct
gaagaataaagtgccaagactcgtaaagaaacagaaaataatgtggagaagccagataat
gatgaagatgacagtgaggggcccagtctgcccctgggactgacaagagcttttgaggat
acttcatttgcttctctatgtaatcttgtcaatgaaaacactctgaaggcaagaaaagaa
atgggttttataaacatgactgaaattcagcataaaagtatcagaccacttctggaaggc
aggaatcttctagcagctgcaaaaacaggcagtggtaaaaccctggcttttctcatccct
gcagttgaactcattgttaagttaaagttcatgcccaggagtgaaacgggagtccttatt
ctctcacctactagaaaactagccatgcaaacttttggtgttcttaaggagctaatgact
caccacgtgcatacctatgggttgataatgggtggcagtaacagatctgcggaagcacag
aaacttgctaatggaatcaacatcattgtggccacaccaggctgtctgctggatcatatg
cagaataccccagggtttatgtataagaacctgcagtgtctggttattgatgaagctgat
cgtatcttggatgttgggtttgaaggggaattaaagcaaattattaaacttttgccaaca
cgtagacagactacgctcttttcagccacccaaattcaaaaagttgaagacctggcaagg
atttctctgaaaaagaagccattgtatgttggtgttgatgatgataaagctaatgcaaca
gtggatggtcttgaacagggatatgttgttggtcctactgaaaagagattccctctgctt
tttacattccttaagaagaaccgaaagaagaaatttgtggtcttcttttcatcttctatg
tccgtgaaataccactatgagttgctgaattacattgatttgcccatcttggccattcat
ggaaagcaaaagcaaaacaagcgtacaaccacattcttccagttctgcaatgcagattca
ggaacactattctgtacagatgtggcagcaagaggactggacattcctgaagcagactgg
attgttcagtatgacccccctgatgaccctaaggaatatattcatcgtgtgggtagaaca
gccagaggcctaaatgggagagggcctgccttgctcattttgcgtccagaagaattgggt
tttcttcactatttgaaacaatccaaggttccattaagtgaatttgagttttcctggtct
aaaatttctgacattcagtcccagcttgagaaattgattgaaaagaactactttcttcgt
aagtcagcccaggaagcatataagttgtacatatgcgcctatgattcccattctctgaag
cagatctttaatgttaataacttaaatttgcctcaggttgctctgtcatttggtttcaag
gtgcctccctttgttgatttgaacatcaacagcaatgaaggcaagcagaaaaagcgagga
ggcggtggcggatttggctaccagaaaaccaaaaaagttgaaaagtccaaaatctttaaa
catattagcaagaaatcgcccgacagcaggcagttctctcactga
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