Callithrix jacchus (white-tufted-ear marmoset): 100403880
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Entry
100403880 CDS
T03264
Symbol
COPA
Name
(RefSeq) coatomer subunit alpha isoform X1
KO
K05236
coatomer subunit alpha
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cjc04131
]
100403880 (COPA)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cjc04147
]
100403880 (COPA)
Membrane trafficking [BR:
cjc04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
100403880 (COPA)
Exosome [BR:
cjc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100403880 (COPA)
Exosomal proteins of bladder cancer cells
100403880 (COPA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
TPR_COPA_B
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR75_1st
WD40_RFWD3
ANAPC4_WD40
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
100403880
NCBI-ProteinID:
XP_035136157
Ensembl:
ENSCJAG00000005837
UniProt:
F7IAN6
LinkDB
All DBs
Position
18:complement(13786220..13836816)
Genome browser
AA seq
1233 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESD
VRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAH
PNLNLFAAGHDGGMIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSG
SKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEITKKVQVPNCDEIFYAGTGNLLLRDADSITLFDVQQK
RTLASVKISKVKYVIWSADMSHVALLAKHEHSCPLPLTAIVICNRKLDALCNIHENIRVK
SGAWDESGVFIYTTSNHIKYAVTTGDHGIIRTLDLPIYVTRVKGNNVYCLDRECRPRVLT
IDPTEFKFKLALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSL
ALECGNIEIALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDKLSFLYLITG
NLEKLRKMMKIAEIRKDMSGHYQNALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEA
ESLKETFDPEKETIPDIDPNAKLLQPPAPIMPLDTNWPLLTVSKGFFEGTIASKGKGGAL
AADIDIDTVGTEGWGEDAELQLDEDGFVEATEGLGDDALGKGQEEGGGWDVEEDLELPPE
LDISPGAAGGAEDGFFVPPTKGTSPTQIWCNNSQLPVDHILAGSFETAMRLLHDQVGVIQ
FGPYKQLFLQTYARGRTTYQALPCLPSMYGYPNRNWKDAGLKNGVPAVGLKLNDLIQRLQ
LCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMEIERK
KLPKETLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTAATFARRLLEL
GPKPEVAQQTRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGAC
YSPEFKGQICRVTTVTEIGKDVIGLRISPLQFR
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atgctaaccaaattcgagaccaagagcgcgcgggtcaaagggctcagctttcaccccaaa
agaccttggatcctgactagtttacataatggggtcatccagttatgggactatcggatg
tgtactctcattgacaagtttgatgaacatgatggtccagtgcgaggcattgacttccat
aagcagcagccactgttcgtctccggaggagatgactataagattaaggtttggaattac
aagcttcggcgctgtcttttcacattgcttgggcacttagattatattcgcaccacattt
tttcatcatgaatatccctggattctgagtgcctcagatgatcagaccatccgagtgtgg
aactggcaatctagaacctgtgtttgtgtgttaacagggcacaaccattatgtaatgtgt
gctcagttccacccgtcagaagacttggttgtatcagccagcctggaccagactgtgcgc
gtttgggatatttctggtctaaggaaaaaaaacctgtcccctggtgctgtggaatcggat
gtgagaggaataactggggttgatctgtttggaactacagatgcagtggtgaaacatgta
ctggagggtcatgatcgtggagtaaattgggctgccttccaccccaccatgccccttatt
gtatctggggcagatgaccgtcaagtgaagatctggcgcatgaatgaatcaaaggcatgg
gaggttgatacctgccggggccattacaacaatgtatcttgtgccgtcttccaccctcgc
caagagttgatcctcagcaattctgaggacaagagtattcgagtctgggatatgtctaag
cggactggggttcagactttccgcagagaccatgatcgtttctgggtcctagctgctcat
cctaaccttaacctctttgcagcaggccatgatggtggtatgattgtgtttaagctggaa
cgggaacggccagcctatgctgttcatggcaatatgctacactatgtcaaggaccgattc
ttacgtcagctggatttcaacagctccaaagatgttgctgtgatgcagctgcggagtggt
tcaaagtttccagtattcaatatgtcatacaatccagcagaaaatgcagtcctgctttgt
accagagccagcaatttggagaatagtacctatgacctgtacaccatccctaaggatgct
gactcccagaatcctgatgcccctgaagggaaacgatcctcaggcctgacagccgtttgg
gtcgctcgaaatcgatttgctgtcctagatcggatgcattcgcttctgatcaagaatctg
aagaatgagatcactaaaaaggtacaggtgcccaactgtgatgagatcttctatgctggc
acaggcaacctcctgcttcgagatgcggactctatcacgctctttgacgtacagcagaag
cggactctggcatctgtgaagatttccaaagtgaaatatgttatctggtcagcagacatg
tcacatgtagcgctactagccaaacatgaacactcatgccctttgcctcttacagccatt
gtgatctgtaaccgaaaactggatgctttatgtaacattcatgagaacattcgtgtcaag
agtggggcctgggatgagagtggggtgtttatctataccacaagcaaccacatcaaatat
gctgtcaccactggggaccacgggatcattcgaactctggatttacccatctatgtcaca
cgggtgaagggtaacaatgtatactgcctagacagggagtgtcgtccccgcgtactcacc
attgatcccactgaattcaaattcaagctggccctgatcaacagaaaatatgatgaggta
ctgcacatggtgaggaatgccaaactagtaggccagtctattattgcttatctccagaag
aagggctatcctgaggtggcactgcattttgtcaaggacgagaaaactcgctttagtctg
gcactggagtgtggaaacattgagattgctctggaagcagccaaagcactggatgacaag
aactgctgggaaaagctgggagaagtggccctgctgcaggggaaccaccagattgtggaa
atgtgctatcaacgtaccaaaaactttgacaaactttccttcctgtatcttatcactggc
aacttagaaaaacttcgcaagatgatgaagattgctgagatcagaaaggacatgagtggc
cactaccagaatgccctatacctgggtgatgtgtcagagcgtgtgcggatcctaaagaac
tgtgggcagaagtccctggcctatctcacagctgctacccatggcttagatgaagaagct
gagagcctaaaggagacatttgacccagagaaggagacaatcccagacattgaccctaat
gccaagctgctccagcctcctgcacctatcatgccactggataccaactggcctttgtta
accgtatccaaagggttctttgaaggcaccattgccagcaaagggaagggaggagcactg
gctgctgacattgacattgacactgttggtacagagggctggggagaagatgcagagctg
cagttggatgaagatgggtttgtggaggctacagaaggtttgggggatgatgctcttggc
aagggacaagaagaaggaggtggctgggatgtagaagaagatttggagctccctcctgag
ctggatatatcccctggggcagctggtggggctgaagatggtttctttgtgcccccaacc
aagggaacaagtccaactcagatctggtgtaataactctcagcttccagttgatcacatc
ctggcaggctcttttgaaacagccatgcggcttcttcatgaccaagtaggggtaatccag
tttggcccctacaagcaactgttcctacagacatatgcccgaggccgtacaacctatcag
gctctgccctgcctaccctccatgtatggctatcctaatcgcaactggaaggatgcaggg
ctgaagaatggtgtaccagctgtgggcctgaagcttaatgacctcatccaacggttgcag
ctgtgctaccagctcaccacagtgggcaaatttgaggaggctgtggaaaaattccgttcc
atccttctcagtgtgccacttcttgttgtggacaataaacaagagattgcagaggcccag
cagctcatcaccatttgccgggagtacattgtgggtttgtccatggagatagaaaggaag
aagctgcccaaagagactctagaacagcagaagcgcatctgtgagatggcagcctatttc
acccactcaaacctgcagcctgtgcacatgatcctcgtgctgcgtacagccctcaacctc
ttcttcaagctcaagaacttcaagacagctgccacctttgctcggcgcctgctggaactc
gggcccaagcctgaggtggcacagcagacccgaaaaattctgtctgcctgtgagaagaat
cctacagatgcctaccagctcaattatgacatgcacaacccctttgacatctgtgctgca
tcgtatcggcccatctaccgtggaaagccagtggagaagtgtccactcagtggggcctgc
tattcccctgagttcaaaggtcagatctgcagggtcaccacagtgacagagattggcaaa
gatgtgattggtttaagaatcagtcctctacagtttcgctaa
DBGET
integrated database retrieval system
