KEGG   Callithrix jacchus (white-tufted-ear marmoset): 100404321
Entry
100404321         CDS       T03264                                 
Symbol
TAF5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
cjc  Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:cjc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    100404321 (TAF5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cjc03021]
    100404321 (TAF5)
   03036 Chromosome and associated proteins [BR:cjc03036]
    100404321 (TAF5)
Transcription machinery [BR:cjc03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     100404321 (TAF5)
   Coactivators
    SAGA/TFTC/STAGA complex
     100404321 (TAF5)
Chromosome and associated proteins [BR:cjc03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     100404321 (TAF5)
    STAGA complex
     100404321 (TAF5)
    TFTC complex
     100404321 (TAF5)
    SAGA complex
     100404321 (TAF5)
    SLIK complex
     100404321 (TAF5)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 TFIID_NTD2 WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML WDR55 Beta-prop_WDR36-Utp21_1st NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_Aladin WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_VPS8 Beta-prop_IFT140_1st Beta-prop_WDR41 Beta-prop_EIPR1 Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_SPT8 WD_LRWD1 Tricorn_2nd Beta-prop_DCAF12 Beta-prop_Nup120_160 PEP5_VPS11_N RAB3GAP2_N CDK5RAP3 Beta-prop_RIG_1st eIF2A Cytochrom_D1 Beta-prop_ACSF4 LisH_PAC1 ABM-like PROPPIN Late_protein_L2
Other DBs
NCBI-GeneID: 100404321
NCBI-ProteinID: XP_002756617
Ensembl: ENSCJAG00000018213
UniProt: F6SS06
LinkDB
Position
12:93013822..93034426
AA seq 800 aa
MAALAEEQTEVAVKLEPEGPPTLLPPQAGDSAGEGSGGTTNNGPNGGGGNVAASSSAGGD
GGTPKPTVAVSASAPAGAAPVPAAAPEAGAPHDRQTLLAVLQFLRQSNLREAEEALRREA
RLLEEAVAGSGAPGEVDSAGAEAASALLSRVTASAPGPAAPDPPGTGASGATAVSGSASG
PAAPGKVGSVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLF
YPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDF
RTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLA
GEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN
APPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTD
DSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILY
GHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYF
VSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGN
CVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFS
RDGEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPV
VHLHFTRRNLVLAAGAYSPQ
NT seq 2403 nt   +upstreamnt  +downstreamnt
atggcggcgctggcggaggagcagacggaggtggcggttaagctagagcctgagggaccg
ccaacgctgctacctccgcaggcgggggacagcgcaggcgagggtagcggcggcactacc
aacaacggccccaacggcgggggcgggaacgttgcggcgtcgtcgtccgctggcggtgat
ggcgggacccccaagcccacggtggctgtctctgcctctgccccggcgggggcggccccg
gtgcctgccgctgctccggaggccggcgctcctcacgaccgacagactctactggcggtg
ctgcagttcctacggcagagcaatctccgcgaggccgaagaggcgctgcgccgtgaggcc
cgactgctggaggaggcagtggcgggctccggagccccgggagaggtggacagcgccggc
gctgaggcggccagcgcgcttctcagccgggtgaccgcctcggcccctggccctgcggcc
cccgaccctccgggtactggcgcttcgggggccacggccgtctcaggttcagcctcaggt
cctgcggctccgggtaaagttggaagtgttgctgtggaagaccagccagatgtcagtgcc
gtgttgtcggcctacaaccaacaaggagatcccacaatgtatgaagaatactatagtgga
ctgaaacactttattgaatgttccctggactgccatcgggcagagttatcccaactcttt
tatcctctgtttgtgcacatgtacttggagctagtctacaatcaacatgagaatgaagca
aaatcattctttgagaagttccatggagatcaggaatgttattaccaggatgacctacga
gtattatctagtcttaccaaaaaggaacacatgaaagggaatgagaccatgttggatttt
cgaacaagtaaatttgttctgcgtatttcccgtgactcgtaccaactcttgaagaggcat
cttcaggagaaacagaacaatcagatatggaacatagttcaggagcacctctacattgac
atctttgatgggatgccgcgtagtaagcaacagatagatgcgatggtgggaagtttggca
ggagaggctaaacgagaggcaaacaaatcaaaggtattttttggtttgttaaaagagcca
gaaattgaggtacctttggatgacgaggatgaagagggagaaaatgaagaaggaaaacct
aaaaagaagaagcctaaaaaagatagtattggatccaaaagcaaaaaacaagatcccaat
gctccacctcagaacagaatccctcttcctgagttgaaagattcagataagttggataag
ataatgaatatgaaagaaaccaccaaacgagtgcgccttgggccagactgcttaccctcc
atttgtttctatacatttctcaatgcttatcagggtctcactgcagtggatgtcactgat
gattctagtctgattgctggaggttttgcagattcaactgtcagagtgtggtctgtaaca
cccaaaaagcttcgtagtgtcaaacaagcatcagatcttagtctcatagacaaagaatca
gatgatgtcttagaaagaataatggatgagaaaacagcaagtgagttgaagattttgtat
ggtcacagtgggcctgtctatggagccagcttcagtccagataggaactatctactttcc
tcttcagaagatggaacagtcagattgtggagccttcaaacatttacttgtttggtggga
tataaaggacacaactatccagtatgggacacgcaattttctccatatggatattatttt
gtgtcagggggccatgaccgagtagctcggctttgggctacagaccactatcagccttta
aggatatttgctggccatcttgctgatgtgaattgtaccagattccatccaaattctaat
tatgttgctacgggctctgcagatagaactgtgcggctctgggatgtcctgaatggtaac
tgtgtaaggatcttcactggacacaagggaccaattcattccttgacattttctcccaat
gggagattcctggctacaggagcaacagatggcagagtacttctttgggatattggacat
ggtttgatggttggagaattaaaaggccacactgatacagtctgttcactcaggtttagt
agagatggtgaaattttggcatcaggttcaatggataatacagttcgattatgggatgct
atcaaagcctttgaagatttagagacagatgactttactacagccactgggcatataaat
ttacctgagaattcacaggagttattattgggaacatatatgaccaaatctacacctgtt
gtacaccttcattttactcgaagaaacctggttctagctgcaggagcttatagtccgcaa
taa

DBGET integrated database retrieval system