Callithrix jacchus (white-tufted-ear marmoset): 100404938
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Entry
100404938 CDS
T03264
Symbol
POLR1B
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2 isoform X1
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100404938 (POLR1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjc03021
]
100404938 (POLR1B)
Enzymes [BR:
cjc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100404938 (POLR1B)
Transcription machinery [BR:
cjc03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
100404938 (POLR1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpa2_4
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-GeneID:
100404938
NCBI-ProteinID:
XP_008978527
Ensembl:
ENSCJAG00000016433
LinkDB
All DBs
Position
14:complement(20033518..20071898)
Genome browser
AA seq
1135 aa
AA seq
DB search
MDPCSRWRNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQA
IPPFEFAFKDQRISFTILDAVISPPTVPKGTICKEASVYPAECRGRRSTYRGKLTVDVNW
AVNGISKGIIKQSLGYVPIMVKSKLCNLHNLPPQALIQHHEEAEEMGGYFIINGIEKVIR
MLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVKEEHSAVNMNLHYLENGTVMLNFIY
RKELFFLPLGFALKALVSFSDYQIFQELIKGKEDDSFFRNSVSQMLRIVMEEGCSTQKQV
LNYLGECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGE
CMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIVFDKKAQKTNLSMNTDNLMKIF
TMGLDLTKPFEYLLATGNLRSKTGLGLLQASGLCVVADKLNFIRYLSHFRCVHRGSDFAK
MRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTTSIPALLCNLGVT
PVDGAPHQPYSECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWMEVVLIPM
TGKPSLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIYEDEVFAGVTTHQE
LFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSP
LVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFID
LSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMY
YKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVE
DMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE
YFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDR
VTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPL
LEKPPPSWSAMRNRKYNCTLCHRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDVV
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atggatccctgcagccggtggcgaaaccttcccagtgggcctagcctaaagcacttgacc
gacccgtcttatggaatcccgcgggaacagcaaaaggcagcgttgcaggagctgacgcgg
gctcatgtggagtccttcaactatgctgtgcacgagggtctcggcctcgcggtgcaggct
atacctcccttcgaatttgctttcaaagatcaacgtatctctttcactattctggatgct
gttatcagtccacctacagttccaaaagggaccatctgcaaagaggccagtgtttatcca
gcagaatgccggggccgaaggagtacctatcgtgggaagttgacagtcgatgtcaactgg
gcagtgaatggaatctcaaaaggaatcattaagcagtctctgggctatgttcccatcatg
gtgaagtccaagctttgcaacttacacaaccttcccccacaagccctcattcagcaccat
gaggaggcagaggaaatggggggctattttataatcaatggcattgaaaaggtcatccga
atgttgattatgcctcggagaaattttcccattgcaatgataagaccaaaatggaaaacc
agagggcctggttatactcagtatggagtttcaatgcactgtgtgaaagaagaacattct
gctgtcaatatgaacctccactacttggaaaatggcactgttatgttgaactttatttac
cggaaagaactgttttttcttcctttgggatttgcacttaaggcacttgtcagcttttcc
gattatcagatctttcaggagctcatcaaaggaaaagaggatgattctttctttagaaac
tctgtttctcagatgttaaggattgtaatggaagagggttgttccacacagaaacaggtc
cttaactatctaggtgaatgcttcagagtaaagctcaatgttcctgactggtacccaaat
gagcaagctgcggagttcctgtttaaccagtgcatctgtatccacttgaaatccaatact
gaaaagttttatatgctttgtcttatgacacgaaagctctttgctttagccaaaggagag
tgcatggaggacaatcctgatagtttagtgaaccaagaagtccttacaccgggtcagctc
ttccttatgtttctgaaggaaaaactggaaggttggttagtgtctattaaaatagttttc
gataagaaggctcagaagaccaatttgtccatgaacactgacaatttgatgaagattttt
actatgggactagaccttacaaaaccatttgaataccttcttgctacagggaatctgcgt
tctaaaacaggtcttggcctcctacaagcatctggactttgtgttgtggctgacaagctg
aacttcatacgctatctctcccatttccgctgcgtgcacagagggtctgattttgccaag
atgaggaccaccacagtacgtagactgctgccagagtcttggggcttcttgtgtcccgtg
cacaccccagacggggagccctgtggcctgatgaaccacctaactgccgtatgtgaggtt
gtcacacagtttgtatatacgacatctattccagctttactctgcaacttgggggtcact
cctgttgatggagctccccaccaaccatacagtgagtgctaccctgtcctgctggacggc
gtcatggttggctgggtggataaggagcttgctccgggcattgcagattctcttcgtcat
tttaaggtgttgagagagaaaagaattcctccctggatggaagtggtccttatacccatg
acaggaaagccaagtctgtacccaggattgttcctttttaccactccttgtagactggta
cggcctgtgcagaacttggaattgggcaaagaagaactaattggaactatggaacagatc
ttcatgaatgtcgctatctatgaggatgaagtttttgctggagttaccacacaccaggaa
ctctttccacacagcctgctgagtgtgatcgccaacttcatccctttctctgatcacaac
cagagtccacggaacatgtaccagtgccagatgggtaaacaaactatgggctttccactt
ctcacttatcaagaccgatcagataacaaactgtatcgtcttcagactcctcagagtccc
ttggtgagaccctccatgtatgattattatgacatggataactatccaattgggaccaat
gccattgttgctgtgatttcttacactggctatgatatggaagatgccatgattgtgaat
aaggcctcttgggaacgaggctttgcccatggaagtgtctacaagtctgagttcatagac
ctctctgaaaaaattaaacaaggagatagtagcctggtgtttggaatcaaacctggtgac
ccacgggttttgcagaagttagatgatgatgggctgccatttataggagcaaaactgcag
tatggagatccgtattacagctacctaaacctcaacactggggaaagttttgtgatgtac
tataagagtaaagaaaattgtgttgtggataacatcaaagtgtgcagtaatgacactggg
agtggaaaattcaagtgtgtttgcatcactatgagagtgcctcggaacccaactattgga
gataaatttgccagtcgtcatgggcagaagggcattttgagtagattgtggccagttgag
gacatgccttttactgagagtgggatggtcccagacattctgttcaatccccatggtttt
ccatcccgcatgaccatcgggatgttaattgagagtatggctggtaagtctgcagctttg
catggtctctgccatgatgctacacccttcatcttctcagaggagaactcagccttagaa
tactttggtgagatgttaaaagctgctggctacaatttctatggcactgagaggttatat
agtggcatcagtggactggaactggaagcagacatcttcataggagtggtttattatcag
cgcttacgccacatggtctcagacaagtttcaagtaaggacaactggagcccgagacaga
gtcaccaaccagcctattggtggaagaaatgtccagggtggaatccgttttggggagatg
gaacgggatgcgcttttagctcacggtacatcttttctccttcatgaccgcctcttcaac
tgctcagatcggtcagtagcccacgtgtgtgtgaagtgtggcagtttactctctccactg
ttggagaagccacccccttcttggtctgccatgcgcaatagaaaatacaactgtactctg
tgtcatcgcagtgacactatcgatactgtttctgtgccttatgtttttcggtattttgta
gctgaactggcagctatgaacatcaaagtgaaactggatgttgtttaa
DBGET
integrated database retrieval system
