Callithrix jacchus (white-tufted-ear marmoset): 100405184
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Entry
100405184 CDS
T03264
Symbol
COL4A2
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04151
PI3K-Akt signaling pathway
cjc04510
Focal adhesion
cjc04512
ECM-receptor interaction
cjc04820
Cytoskeleton in muscle cells
cjc04926
Relaxin signaling pathway
cjc04933
AGE-RAGE signaling pathway in diabetic complications
cjc04974
Protein digestion and absorption
cjc05146
Amoebiasis
cjc05165
Human papillomavirus infection
cjc05200
Pathways in cancer
cjc05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100405184 (COL4A2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100405184 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100405184 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100405184 (COL4A2)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
100405184 (COL4A2)
09154 Digestive system
04974 Protein digestion and absorption
100405184 (COL4A2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100405184 (COL4A2)
09162 Cancer: specific types
05222 Small cell lung cancer
100405184 (COL4A2)
09172 Infectious disease: viral
05165 Human papillomavirus infection
100405184 (COL4A2)
09174 Infectious disease: parasitic
05146 Amoebiasis
100405184 (COL4A2)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
100405184 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cjc04147
]
100405184 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
cjc00536
]
100405184 (COL4A2)
Exosome [BR:
cjc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100405184 (COL4A2)
Glycosaminoglycan binding proteins [BR:
cjc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100405184 (COL4A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100405184
NCBI-ProteinID:
XP_035149830
Ensembl:
ENSCJAG00000014238
UniProt:
U3BU47
LinkDB
All DBs
Position
1:25214223..25424557
Genome browser
AA seq
1711 aa
AA seq
DB search
MGRNQRAAAGPALPRWLLLGTVTVGFLSQSVLAGVKKSDVPCGGRDCSGGCQCFPEKGGR
GQPGPVGPQGYTGPPGLQGFPGLQGRKGDKGERGAPGITGPKGDVGARGVSGFPGADGIP
GHPGQGGPRGRPGYDGCNGTQGDSGPQGPPGSEGFTGPPGPQGPKGQKGEPYALPKEERD
RYRGEPGEPGLVGFQGPPGRPGPVGQMGPVGAPGRPGPPGPPGPKGQQGNRGLGFYGVKG
EKGDVGQPGPNGIPPETHPVIAPTRVTHHPEQDKGEKGSEGEPGIKGISLKGEEGIMGFP
GPRGYPGLSGEKGSPGQKGSRGLDGYQGSDGPRGPKGETGDPGPPGLPAYSPHPSLAKGA
RGDPGFPGARGEPGSQGEPGDPGPRGPPGISITAEDLGRGLPGEMGPKGFIGDPGIPALY
PGPPGLDGKPGLPGPPGLPGPPGPDGFLFGLKGAEGRGGFPGLSGSPGARGQKGRKGDAG
DCRCVEGDEAVRGLPGLPGPKGFPGINGEPGRKGDRGDPGQHGLPGFSGLKGVPGNLGAP
GPKGAKGDSRTITTKGERGQPGVPGVPGMKGDDGIPGREGLDGFPGLPGPPGDGIKGPPG
DPGYPGIPGTKGSPGEMGPPGLGLPGFKGQRGFPGDAGLPGPRGFPGPPGPPGTPGQADC
DPDVRRPIAGDRQEAVQPGCAGGPKGLPGLPGPPGPTGAKGLRGTPGFSGADGGAGPKGL
PGDPGREGFPGPPGFIGPRGSKGAAGLPGPDGLPGPVGLPGPVGPPGDKGLPGEVLGAQP
GPRGDAGVPGHPGLKGLPGDRGTPGFRGSQGMPGMPGLKGQLGFPGPSGQPGLSGPPGQH
GFPGAPGPEGPLGLPGTLGLGGLPGDRGEPGDVGAPGPVGMKGVSGDTGDAGLAGERGRP
GSPGFKGIDGMPGAPGLKGERGSPGMDGFQGMPGLKGRPGIPGSKGEAGFFGIPGLKGLA
GEPGFKGSRGDPGPPGPPPIILPGMKDIKGEKGDEGPMGLKGYLGAKGTQGMPGIPGLSG
IPGLPGRPGHIKGLKGDIGAPGIPGLPGFPGVAGPPGITGFPGFTGSRGDKGAPGRAGLY
GEAGQTGDFGDIGDTINLPGRPGLKGERGTAGIPGLKGFFGEKGTEGDIGFPGITGVTGV
QGPPGLKGQAGFPGLTGPPGPQGEPGRIGLPGGKGDDGWPGAPGLPGFPGPRGISGLHGL
PGTKGFPGSPGADIHGDPGYSGPPGERGDPGEANTLPGPVGVPGQKGEQGAPGQRGPPGS
PGLQGFPGITPPSNISGAPGDKGAPGIFGLKGYRGPPGPPGSAALPGSKGDTGNPGAPGT
PGTKGWVGDPGPQGRPGVLGLPGEKGPRGEQGFMGNPGLPGPVGDRGPKGPKGDPGFPGA
PGIVGAPGIAGIPQKIATQPGTVGPQGRRGPPGAPGEMGPQGPPGEPGFRGAPGKAGPQG
RGGVSAVPGFRGDEGPTGHQGPIGQEGVPGRPGSPGLPGMPGRSVSIGYLLVKHSQTDQE
PMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRN
DKSYWLSTTAPLPMMPVAEDEIKPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWI
GYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGGRGTCHYYANKYSFWLTTIPE
QSFQGSPSADTLKAGLIRTHISRCQVCMKNL
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atggggagaaaccagcgcgcggcggccggccctgccctaccacggtggctgctgctgggg
accgtgaccgtggggttcctctcccagagcgtcttggcgggtgtgaagaagtctgatgtg
ccgtgtggcggaagagattgcagtgggggctgccagtgcttccctgagaaaggcggacgc
ggtcagcctgggccagtgggcccccaggggtacactgggccaccaggactgcaaggattc
ccgggactgcagggccgcaaaggagacaagggtgaaagaggagcccccggaatcacagga
cccaagggagacgtgggagcaagaggcgtttctggattccctggtgccgatggaattcct
ggacacccggggcaaggtgggcccaggggaaggcccggctacgatggctgcaacggaacc
cagggagactcaggtccacagggtccccccggctcggaggggttcaccgggcctcccggg
ccccaaggaccaaaagggcagaaaggtgagccttacgcactgcctaaagaggagcgcgac
agatatcggggtgaacctggagagcctggattggttggtttccagggacctcccggccgc
cctgggcctgtgggacagatgggtccagttggagctccagggagaccaggaccacctgga
ccccctggaccaaaaggacagcaaggaaacagaggacttggtttctacggagtgaagggt
gaaaagggtgacgtagggcagccaggacccaacgggattccaccagaaacccaccccgtc
atcgcgcccacgagagtcacccaccacccagaacaggacaagggtgaaaaaggcagcgag
ggcgaaccgggaataaaaggcatttccttgaagggagaagaaggaatcatgggctttcct
ggaccaaggggttaccctggcttgagtggtgaaaaaggatcgccgggacagaagggaagc
cgaggcctggatggttatcaaggctctgatgggccccggggccccaagggagaaaccgga
gacccaggaccccctggactacctgcctactcccctcacccttccctagcaaaaggtgcc
agaggtgacccaggattcccaggggcccgaggggagccaggaagccagggtgagccagga
gacccaggcccccgaggcccacctggcatctccatcacagctgaagatctggggagaggc
ctgccgggtgagatgggacccaaaggcttcatcggagaccccggcatcccggctctctac
ccgggcccacccggacttgacggaaagccggggcttccaggaccccccgggctccctgga
ccgcctgggcctgatggcttcctgtttggcctgaaaggagcagaaggaagagggggcttc
cctgggctttctggctcccctggagcccgtggacagaagggacggaaaggtgatgctgga
gactgcagatgtgtagaaggcgacgaagctgtcagaggtcttccgggactgccaggaccc
aagggcttcccaggcatcaacggggagccagggaggaaaggggacagaggagaccccggc
caacacggccttcctgggttctcagggctcaagggagtccctggcaatcttggtgctccc
ggacccaagggagcaaaaggagattccagaacaatcacaacgaaaggtgagcggggacag
cccggcgtcccaggtgtccccgggatgaaaggtgacgacggcatcccaggccgcgagggg
ctcgatggattccccggcctcccgggccctcccggcgatggcatcaaaggccctccaggg
gacccgggctatccaggaatacctggaacaaagggttctccaggagaaatgggtccccca
ggactgggccttcccggcttcaaaggccaacgtggtttccctggagacgccggcttacct
ggaccacgcggcttcccaggccctcccggccctccagggaccccaggacaggcagattgt
gacccagatgtgagaaggcccattgcaggtgacagacaggaggccgtccagccaggttgc
gcaggagggcccaagggattgccaggcctgccaggacccccaggccccacaggtgccaaa
ggcctccgaggaaccccaggcttctcaggagctgatggaggagcaggacccaaaggcttg
ccaggagacccaggtcgtgaagggttcccaggacccccagggttcataggaccccgagga
tccaaaggtgcagcgggtctccctggcccagatggactcccaggtcccgtcggcctgcca
ggtccagtcgggccccccggggacaagggccttcctggagaagtcctgggagcccaacct
ggaccacggggagatgctggcgtgcctggacaccctgggctgaaaggccttcctggagac
agaggcacccctggattcagaggaagccaagggatgcctgggatgcccgggctgaagggc
cagctgggcttcccgggaccgtccggccagccaggcctgtccgggcctccaggacagcat
ggattcccaggagctcctggcccagaggggcctttgggactgccaggaaccctgggcctt
ggaggtctgcctggagatagaggggagcccggcgacgtgggtgctcccggccctgtgggc
atgaaaggtgtctctggtgacacaggagatgctggcttggcgggagagcgaggccgtcca
ggaagccctgggtttaaaggaattgatggaatgcctggggcccccgggctcaaaggagag
agaggctcgcctgggatggacggtttccagggcatgcctggactcaaagggagacccggg
attccggggagcaaaggcgaggcaggatttttcggaatacctggtctgaagggtctggct
ggtgaaccaggttttaaaggcagccgaggggatcctgggcccccaggaccacctcccatc
atcctgccaggaatgaaagacatcaagggggagaaaggagatgaagggcctatggggctg
aaaggatacctgggcgcgaaaggtacccaaggaatgccaggcatcccggggctgtcagga
atccctggactgcctgggcggcctggccacatcaaaggactcaagggagacattggagcc
cccggcatccctggtttgccaggattccctggggtggccggcccccctggaattacagga
ttcccaggattcacaggaagccggggtgacaaaggtgccccggggagagcaggcctgtac
ggcgaggctggccagaccggtgatttcggtgatatcggggacactataaatttgccagga
agaccaggcctgaagggggagcggggcaccgctggaataccaggtctgaagggattcttt
ggagaaaagggaacagaaggtgacattggcttccctgggataacaggcgtgactggagtc
caaggtcctcccggacttaaaggacaagcaggctttccagggctgactgggccaccaggg
cctcagggagagcccgggcggattggactgcctggtggcaaaggggatgatggctggcca
ggagctccaggcttaccaggttttccaggaccccgtgggatcagcggcttacacggcttg
ccaggcaccaaaggcttcccgggatccccaggtgctgacatccacggagacccaggctac
tcaggtcctcctggggagagaggtgacccaggagaggccaacaccctgccaggccctgtg
ggagtcccaggacagaaaggagaacaaggagctccagggcaacgaggcccacccgggagt
ccaggacttcaggggttccccggcatcacgcccccttccaacatctctggggcacctggt
gacaaaggggcgccagggatatttggcctgaaaggttatcggggcccacccgggccaccg
ggatctgctgctcttcctggaagcaaaggtgacacagggaacccaggagctccaggaacc
ccagggaccaaaggatgggttggggaccccgggccccagggcaggcccggcgtgctcggt
ctcccaggagaaaaagggcccaggggtgaacaaggcttcatggggaaccctggactcccc
ggacctgtgggtgacagaggccccaagggacccaagggagacccaggattccccggtgcc
cccggcatcgtgggagcccccgggattgcaggaattccccagaagatcgctacccaacca
gggacagtgggtccccaggggaggcgaggccctcctggggcacccggggagatggggccc
cagggcccccccggagaaccaggtttccgtggggctccagggaaagccgggccccaggga
agaggtggcgtgtctgctgttcctggcttccggggagatgaagggcccacaggccaccag
gggccgattggccaagaaggtgtgccaggccgtccagggagcccgggcctgcccggcatg
ccaggccgcagtgtgagcatcggctacctcttagtgaagcacagccagacggaccaggag
cccatgtgccctgtgggcatgaacaagctctggagcgggtacagcctgctgtactttgag
ggccaggagaaagcacacaaccaggacctggggctagcgggctcctgcctggcacggttc
agcaccatgccctttctctactgcaaccctggggacgtctgctactatgccagccggaac
gacaagtcttactggctctccaccaccgccccgctgcccatgatgcccgtggccgaagac
gagatcaagccttacatcagccgctgctctgtgtgtgaggccccagccgtcgccattgct
gtccacagccaagatgtctccatcccccactgcccagctgggtggcggagtttgtggatc
ggatattccttcctcatgcacacggcagcgggagacgaaggcggtggccagtcactggtg
tcaccaggcagttgtctggaggacttccgcgccacgccattcatcgagtgcaatggaggc
cgcggcacctgccactactacgccaacaagtacagcttctggctgaccaccatccccgag
cagagcttccagggctcgccctcggctgacacactcaaggctggcctcatccgcacacac
atcagccgctgccaggtgtgcatgaagaacctgtga
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