Callithrix jacchus (white-tufted-ear marmoset): 100405252
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Entry
100405252 CDS
T03264
Symbol
BARD1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100405252 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjc03019
]
100405252 (BARD1)
04121 Ubiquitin system [BR:
cjc04121
]
100405252 (BARD1)
03036 Chromosome and associated proteins [BR:
cjc03036
]
100405252 (BARD1)
03400 DNA repair and recombination proteins [BR:
cjc03400
]
100405252 (BARD1)
Messenger RNA biogenesis [BR:
cjc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
100405252 (BARD1)
Ubiquitin system [BR:
cjc04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
100405252 (BARD1)
Chromosome and associated proteins [BR:
cjc03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
100405252 (BARD1)
DNA repair and recombination proteins [BR:
cjc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
100405252 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_6
Ank_4
Ank_2
Ank
Ank_3
Ank_5
BRCT
BRCT_2
zf-RING_5
zf-C3HC4
zf-C3HC4_2
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
100405252
NCBI-ProteinID:
XP_008997678
Ensembl:
ENSCJAG00000011473
LinkDB
All DBs
Position
6:complement(133013534..133101641)
Genome browser
AA seq
853 aa
AA seq
DB search
MPGNPQPRNRQPTVRSGNEPCSAPAMDPAGGGAWAHSRAALDRLEKLLRCSRCTNILREP
VCLGGCEHIFCSNCVSDCIGTECPVCYTPAWIQDVKINRQLDSMIQLYSKLRNLLHDNKL
SDLKEDKSRTRLFNDAENKKNSIKMWFSPRSKKVRYVVRKVSVQTQPKIKNDVNAQQDSM
YEFVSTTPPADVSEKAKTASARSLKKQKKKTLAEINQKWNLQAVKEDGKFDTKEESKQKL
ISFCSQPSVITSPEINGEIDLLASGSLTESECFGSLTEVSLPLAEQIESPDTKSRNEVVT
PEKVCKNYLTCKKPLPLENNGKRGQDNRLSIPVSKRCRSNNLNTSGDFVKQLVLSENTPL
PESSPDTKSKNEIVTPEKVCKNYLTSKKSLPLENNGKRGQHNRRSSPISKRCRSSVLSTS
GDFVKQMVPSEDIPLPESSSPPSCKRQVHGTSGRKNSNMSDELISLSPGTPPSTLNSSRY
RRVTSSPSAMKLLPNMAVKRNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTP
LHEACNHGHLKIVELLLQHKALVNTTGYQNDSPLHDAAKNGHMDIVKLLLSCGASRNAVN
IFGLRPVDYTDDEDMKSLLLLPEKNESSSTNHCSVMNTGQRKDGPLVLIGSGLSSEQQKM
LSELAAILKAKKRTEFDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRKV
CEQEEKYEIPEGPQRSRLNREQLLPKLFDGCYFYLGGTFKHHPKDNLIKLVTAGGGQILS
RKPKSDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDLSNYRPERVRQGKVWMAPSSWFI
DCVMSFELLPLDN
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgccggggaacccgcagccgaggaaccggcagccgacggtccgctccgggaacgagcct
tgctctgcgcccgccatggatccggccggtggcggggcgtgggcccacagtcgagccgcg
ctcgaccgcctggagaagctgctgcgttgctcgcgttgcactaacattctgagagagcct
gtgtgcttaggaggatgtgagcacatcttctgtagtaattgtgtaagtgactgcattgga
actgaatgtccggtgtgttacaccccagcctggatacaagatgtgaagattaatagacaa
ctggacagcatgattcaactttatagtaagcttcgaaatttgctacatgacaataagctc
tcagatttgaaagaagataaatctaggacaaggttgtttaatgatgcagaaaacaagaag
aattcaattaaaatgtggtttagccctcgaagtaagaaagtcagatatgttgtgcgtaaa
gtttcagtgcagacccagcctaaaataaaaaatgatgtaaatgctcagcaagactccatg
tatgaatttgtttccacaactcctcctgcagatgtttctgagaaggctaaaacggcttct
gcaagatctctaaaaaagcaaaaaaagaaaactttagctgaaatcaaccaaaaatggaat
ttacaggcagtaaaagaagatggcaaatttgacaccaaagaggaatcgaagcaaaagctg
atatccttctgtagccaaccatccgttatcaccagccctgagataaatggtgaaatagac
ttactagcaagtggctccttgacagaatctgaatgttttggaagtttaactgaagtctct
ttaccattggctgagcaaatagagtctccagacactaagagcaggaatgaagtagtgact
cctgaaaaggtctgcaaaaattatcttacatgtaagaaacctttgccattagaaaataat
ggaaaacgtggccaagacaatagactttccattcccgtttctaagagatgtagaagcaac
aatctgaacaccagtggagattttgttaagcaactagtgctctcagaaaatactccattg
cctgaaagttctccagacactaagagcaagaatgaaatagtgactcctgagaaggtctgc
aaaaattatcttacatctaagaaatctttgccattagaaaataatggaaaacgtggccaa
cacaatagacgttccagtcccatttctaagagatgtagaagcagcgttctgagcaccagt
ggagattttgttaagcagatggtgccctcagaagatattccattacctgaaagttcttcg
ccaccttcatgcaaacgtcaagttcatggtacatcggggaggaaaaacagtaatatgtca
gacgaactcattagtctttcaccaggtacaccaccttctacattaaatagttcaaggtac
agacgagtgacatctagtccctcagcaatgaagctgttacccaatatggctgtgaaaaga
aatcatagaggagagactttactccatattgcttctattaagggcgacataccttctgtt
gaataccttttacaaaatggaagtgacccaaatgttaaagaccatgctggatggacacca
ttgcatgaagcttgcaatcatgggcacctaaagatagtggaattattgctccagcataag
gcattggtgaataccactgggtatcaaaatgactcaccacttcacgatgcagccaagaat
gggcacatggatatagtcaagctattactttcctgtggagcctccaggaatgctgttaac
atatttggtctgcggcctgtggattatacagacgatgaagatatgaagtcactattgctg
ctcccagagaagaatgaatcatcctcaaccaaccattgctcggtaatgaacactgggcag
cgaaaggatggacctcttgtccttataggcagtgggctttcttcagaacaacagaaaatg
ctcagtgagcttgcagcaattcttaaggctaaaaaacgtactgagtttgacagtacagta
actcatgttgttgttcctggtgatgcagttcagagtaccctgaagtgtatgcttgggatt
ctcaatggatgctggattctaaaatttgaatgggtaaaagcatgtctgcgaagaaaagta
tgtgaacaggaagaaaagtatgaaattcctgaaggtccacagagaagcaggctcaacaga
gaacagctgttgccaaaactgtttgatggatgctacttctatttggggggaaccttcaaa
caccatccaaaggacaaccttattaagctcgtcactgcaggtgggggccagatcctcagt
agaaagcccaagtcagacagtgacgtgactcagaccatcaatacagttgcataccatgcc
agacccgattctgatcagcgcttctgcacacagtatatcatctatgaggatttgtctaat
tatcgcccagagagggttcgtcagggcaaagtctggatggctccttccagctggtttata
gactgtgtgatgtcctttgagttgcttcctcttgacaactga
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integrated database retrieval system
