Callithrix jacchus (white-tufted-ear marmoset): 100405701
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Entry
100405701 CDS
T03264
Symbol
VARS1
Name
(RefSeq) valine--tRNA ligase isoform X4
KO
K01873
valyl-tRNA synthetase [EC:
6.1.1.9
]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
100405701 (VARS1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
cjc01007
]
100405701 (VARS1)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cjc03016
]
100405701 (VARS1)
Enzymes [BR:
cjc01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.9 valine---tRNA ligase
100405701 (VARS1)
Amino acid related enzymes [BR:
cjc01007
]
Aminoacyl-tRNA synthetase
Class I (U)
100405701 (VARS1)
Transfer RNA biogenesis [BR:
cjc03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
100405701 (VARS1)
Prokaryotic type
100405701 (VARS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1
Anticodon_1
GST_C
tRNA-synt_1g
tRNA-synt_1_2
Jag_N
GST_C_2
tRNA-synt_1e
Motif
Other DBs
NCBI-GeneID:
100405701
NCBI-ProteinID:
XP_002746402
Ensembl:
ENSCJAG00000002604
LinkDB
All DBs
Position
4:complement(35411855..35428415)
Genome browser
AA seq
1264 aa
AA seq
DB search
MSILYVSPHPDAFPSLRALIAARYGEAGEGPGWGGAHPRICLQPPPTSRTPFPPPRLPAL
EQGPSGLWVWGATAVAQLLWPAGLGGPGGSQAAVLVQQWVSYADTELIPAACGATLPALG
LRNSAQDPQAVLGALGRALSPLEEWLRLHTYLAGEAPTLADLAAVTALLLPFRYVLDPPA
RRIWNNVTRWFVTCVQQPEFRAVLGEVVLYSGARPLSQQPGPEAPALPKTAAQLKKEAKK
REKLEKFQQKQKIQQQQPPPGEKKPKPEKREKRDPGVITYDLPTPPGEKKDVSGPMPDSY
SPRYVEAAWYPWWEQQGFFKPEYGRPNVSAANPRGVFMMCIPPPNVTGSLHLGHALTNAI
QDSLTRWHRMRGETTLWNPGCDHAGIATQVVVEKKLWREQGLSRHQLGREAFLQEVWKWK
EEKGDRIYHQLKKLGSSLDWDRACFTMDPKLSAAVTEAFVRLHEEGVIYRSTRLVNWSCT
LNSAISDIEVDKKELTGRTLLSVPGYKEKVEFGVLVSFAYKVQGSDSDEEVVVATTRIET
MLGDVAVAVHPKDTRYQHLKGKNVIHPFLSRSLPIIFDEFVDMEFGTGAVKITPAHDQND
YEVGQRHGLEAISIMDSRGALVNVPPPFLGLPRFEARKAVLVALKERGLFRGIEDNPMVV
PLCNRSKDVVEPLLRPQWYVRCGEMAQAASAAVTRGDLHILPEAHQRTWHAWMDNIRDWC
ISRQLWWGHRIPAYFVIVNDPAVPPGEDPDGRYWVSGRNEAEALEKAAKEFGVSPDKISL
QQDEDVLDTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKL
TGRLPFREVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHDQLLNSNLDPSEVE
KAKEGQKADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFA
LRGLGKDFVPSPTSQPGGHESLVDRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLY
ELCDVYLECLKPVLNGADQVAAECARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTP
QAPPSLCITRYPEPSECSWKDPEAEAALELALSITRAVRSLRADYNLTRIRPDCFLEVAD
EATGALVSAVSGYVQALASAGVVAVLALGAPAPQGCAVALASDRCSIHLQLQGLVDPARE
LSKLQAKRVEAQRQAQRLRERRAASGYPVKVPPEVQEADEAKLQQTEAELRKVDEAIALF
QKML
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
atgtccatcctctacgtctcccctcacccagatgccttccccagcctccgagcactcata
gccgctcgctatggggaggctggggagggtccgggatggggaggagcccacccccgcatt
tgtctccagccgcccccgactagcaggactccctttcccccaccccgcctgccggccctg
gagcaggggcccagtgggctttgggtgtggggggccacggctgtggcccagctgctgtgg
ccagcaggcctggggggcccagggggcagccaggcggctgttctcgtccaacagtgggtc
agttacgctgacacggagctaataccagctgcctgtggggcaacgctgccagccctggga
ctgcgaaactcggcccaggatccccaggctgtgctgggggccctgggcagggccctgagc
cccttagaggagtggcttcggctgcacacctacttggccggggaggcccccactctggct
gacctggcagccgtcacagccttgctgctgcctttccgatatgtcctagacccacctgcc
cgccggatttggaataatgtgactcgctggtttgtcacgtgtgtccagcagccagaattc
cgagctgtgctgggagaagtggttctatactcaggggccaggccgctctctcaacagcca
ggccccgaggcgcctgctctcccaaagacagctgctcagctcaagaaagaggcaaagaaa
cgggagaaactagagaaattccaacagaagcagaagatccaacagcagcagccacctcca
ggggagaagaaaccaaaaccggagaagagggagaaacgggatcctggagtcattacctat
gacctcccaaccccacctggggaaaagaaagatgtcagtggccccatgcccgactcctac
agccctcggtatgtggaagctgcctggtacccttggtgggagcagcagggcttcttcaag
ccagagtatgggcgtcctaatgtgtcagcagcaaatcctcgaggtgtcttcatgatgtgc
atcccaccccccaacgtgacaggctccctgcacctgggccatgcacttaccaacgccatc
caggactccctgactcgatggcaccgcatgcgtggggagaccaccctctggaaccctggc
tgtgaccacgcaggcattgccactcaggtggtagtggagaagaaactatggcgtgagcag
gggctgagccggcaccagctgggccgcgaggcctttctacaggaggtctggaaatggaag
gaggagaaaggtgaccggatttaccaccagttgaagaagcttggcagctccttggactgg
gatcgagcctgtttcaccatggaccctaaactctcagcagctgtgacagaggcttttgtc
cggcttcatgaggaaggtgtcatctatcgcagtacccgccttgttaactggtcctgcacc
ctcaactccgccatctctgacattgaggtggataagaaggagttgacaggccgcaccctg
ctctctgtgcctggctacaaggaaaaggtggagtttggggtcctcgtgtcctttgcctat
aaggtccaaggctcagatagcgacgaggaggtggtggtggcaacaactcggattgagaca
atgctgggagatgtggctgtagctgtgcaccccaaagataccagataccagcacctgaag
gggaagaacgtgatccacccattcctgtctcggagccttcccattatcttcgatgaattt
gttgacatggaatttggcacaggtgctgtgaagatcacccccgcacatgaccaaaacgac
tatgaagttgggcagcggcatgggctggaggccatcagcatcatggactcccggggggcc
ctcgtcaacgtgcctccgcctttcctgggcctacccaggtttgaggccaggaaggcagtg
ctggtggcgctgaaggaacggggactgttccgtggcatcgaggacaaccccatggtggtg
ccactttgcaaccggtcgaaggacgtagtagagcctctgctgcggccgcagtggtacgtg
cgctgcggagagatggcccaggctgccagtgcggccgtgacacggggagacctccacatc
ctgcctgaggcccatcagcgcacatggcatgcctggatggacaacatccgggactggtgc
atttccaggcagctgtggtggggccatcgcatcccagcatacttcgtcattgtcaatgac
ccagcagtgccccctggggaggaccctgacgggcggtactgggtgagtggacgaaacgag
gcagaggccctggagaaggcggccaaggagttcggagtgtcccctgacaagataagtctc
cagcaagatgaggatgtattggatacctggttctcctctggcctcttccccttttccatc
ttgggctggcccaaccagtcagaagacctgagtgtgttctaccctgggacactgctggag
actggtcacgacatcctcttcttctgggtggcccggatggtcatgctgggtctgaagctc
acgggcagactgccctttagagaggtctacctccatgccattgtgcgagatgctcatggt
cggaagatgagcaagtctctaggcaatgtcatcgatcccctggatgtcatccacggagtc
tccctgcagggcctccatgaccagctgctgaacagcaaccttgatcccagtgaggtggag
aaggccaaggaagggcagaaagctgacttcccagcggggattcccgagtgtggcaccgat
gctctccggtttggattatgtgcctacacgtcccaaggtcgtgacatcaacctggatgtg
aatcggatactgggttaccgccacttctgtaacaagctctggaatgccaccaaatttgcc
ctccgtggtcttgggaaggattttgtgccttcacccacctcccagcccggaggccatgag
agcctggtggaccgctggatccgcagccgcctgacagaggctgtgaggctcagcaaccaa
ggcttccaggcctacgacttcccggccgtcaccactgcccagtatagcttctggctctat
gagctctgtgacgtctacttggagtgcctcaaacctgtactgaatggggcggaccaggtg
gcagctgagtgtgcccgccagaccctgtacacctgcctggatgttggcctacgcctgctc
tcgcctttcatgcccttcgtgacagaggagctgttccagagactgcctcggaggacgccg
caagctccccctagcctctgcattacccgatacccggagccctcggagtgctcctggaag
gacccggaggcagaagccgccctcgagctggcgctaagtatcacgagagctgtgcgctcc
cttcgggctgactacaatctcacccggatccggcctgactgtttcctggaagtggcagat
gaggccacgggtgccttggtgtcagctgtgtcgggctacgtgcaggcactggccagtgcg
ggtgtggtggccgtcctggccctgggggctcccgccccacagggttgcgctgtagccctg
gcctctgatcgctgctccatccacctgcagctgcaggggttggtggacccagcgagggag
ctgagcaagctgcaagccaagagagttgaggcacagcggcaggcccagcgtctgcgggaa
cgccgtgctgcctcaggctaccctgtcaaggtgccccctgaagtccaggaggcagatgaa
gccaagctccaacagacagaagcagagctcaggaaggtggatgaggccatcgccctattc
cagaagatgctgtga
DBGET
integrated database retrieval system
