Callithrix jacchus (white-tufted-ear marmoset): 100406702
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Entry
100406702 CDS
T03264
Symbol
SUPT6H
Name
(RefSeq) transcription elongation factor SPT6 isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjc03021
]
100406702 (SUPT6H)
03036 Chromosome and associated proteins [BR:
cjc03036
]
100406702 (SUPT6H)
Transcription machinery [BR:
cjc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
100406702 (SUPT6H)
Chromosome and associated proteins [BR:
cjc03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
100406702 (SUPT6H)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
SPT6_acidic
Tex_central_region
Spt6_S1
HHH_3
S1
HHH_9
S1_RRP5
SH2
Tex_YqgF
Tex_N
Motif
Other DBs
NCBI-GeneID:
100406702
NCBI-ProteinID:
XP_002748289
Ensembl:
ENSCJAG00000012982
UniProt:
U3D391
LinkDB
All DBs
Position
5:complement(100959564..101001576)
Genome browser
AA seq
1726 aa
AA seq
DB search
MSDFVESEAEESEEEYNDEGEVVPRVTKKFVEEEDDDEEEEEENLDDQDEQGNLKGFIND
DDDEDEGEEDEGSDSGDSEDDVGHKKRKRTSFDDRLEDDDFDLIEENLGVKVKRGQKYRR
VKKMSDDEDDDEEEYGKEEHEKEAIAEEIFQDGEGEEGQEAMEAPMAPPEEEEEDDEESD
IDDFIVDDDGQPLKKPKWRKKLPGYTDAALQEAQEIFGVDFDYDEFEKYNEYDEELEEEY
EYEDDEAEGEIRVRPKKTTKKRVSRRSIFEMYEPSELESSHLTDQDNEIRATDLPERFQL
RSIPVKGAEDDELEEEADWIYRNAFATPTISLQESCDYLDRGQPASSFSRKGPSTIQKIK
EALGFMRNQHFEVPFIAFYRKEYVEPELHINDLWRVWQWDEKWTQLRIRKENLTRLFEKM
QAYQYEQISADPDKPLADGIRALDTTDMERLKDVQSMDELKDVYNHFLLYYGRDIPKMQN
AAKASRKKLKRVREEGDEEGEGEEAEDEEQRGPELKQASRRDMYTICQSAGLDGLAKKFG
LTPEQFGENLRDSYQRHETEQFPAEPLELAKDYVCSQFPTPEAVLEGARYMVALQIAREP
LVRQVLRQTFQERAKLNITPTKKGRKDVDEAHYAYSFKYLKNKPVKELRDDQFLKICLAE
DEGLLTIDISIDMKGVEGYGNDQTYFEEIKQFYYRDEFSHQVQEWNRQRTMAIERALQQF
LYVQMAKELKNKLLAEAKEYVIKACSRKLYNWLRVAPYRPDQQVEEDDDFMDENQGKGIR
VLGIAFSSARDHPVFCALVNGEGEVTDFLRLPHFTKRRTAWREEEREKKAQDIETLKKFL
LNKKPHVVTVAGENRDAQMLIEDVKRIVHELDQGQQLSSIGVELVDNELAILYMNSKKSE
AEFRDYPPVLRQAVSLARRIQDPLIEFAQVCSSDEDILCLKFHPLQEHVVKEELLNALYC
EFINRVNEVGVDVNRAIAHPYSQALIQYVCGLGPRKGTHLLKILKQNNTRLESRTQLVTM
CHMGPKVFMNCAGFLKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESA
EDANPAGALEEILENPERLKDLDLDAFAEELERQGYGDKHITLYDIRAELSCRYKDLRTA
YRSPNTEEIFNMLTKETPETFYIGKLIICNVTGIAHRRPQGESYDQAIRNDETGLWQCPF
CQQDNFPELSEVWNHFDSGSCPGQAIGVKTRLDNGVTGFIPTKFLSDKVVKRPEERVKVG
MTVHCRIMKIDIEKFSADLTCRTSDLMDRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQ
QRTTYIKRVIAHPSFHNINFKQAEKMMETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQH
VDVREEGKENAFSLGATLWINSEEFEDLDEIVARYVQPMASFARDLLNHKYYQDCSGGDR
KKLEELLIKTKKEKPTFIPYFICACKELPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQI
FPTVNGLFRWFKDHYQDPVPGITPSSSSRTRTPASINATPANINLADLTRAVNALPQNMT
SQMFSAIAAVTGQGQNPNATPAQWASSQYGYGGSGGGSSAYHVFPTPAQQPVATPLMTPS
YSYTTPSQPITTPQYHQLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQ
WLQEKEAERRKQKQRLTPRPSPSPMIESTPMSIAGDATPLLDEMDR
NT seq
5181 nt
NT seq
+upstream
nt +downstream
nt
atgtctgattttgtggaaagcgaggctgaggagtcagaggaagaatacaatgatgaaggc
gaggtggtaccccgagtcaccaagaaatttgtggaagaggaggatgatgatgaggaggag
gaagaggagaacctagatgatcaagatgagcaaggcaacctgaaaggctttatcaatgac
gatgatgatgaagatgaaggagaggaggatgagggcagtgactctggcgattcagaagat
gatgttggccacaagaagagaaaacgcacctcttttgacgaccgcctggaggatgatgat
tttgacctcattgaggagaatttaggtgtcaaagtcaaaagaggacaaaagtaccggcgt
gtcaaaaaaatgtcagatgatgaggacgatgacgaggaggaatatggcaaggaggaacat
gaaaaagaagctattgcggaggaaatcttccaggatggggaaggggaagaaggacaggag
gccatggaggcccccatggctcctccagaggaggaggaagaagatgatgaggagtcagat
attgatgacttcattgtggatgatgatggacagcctctgaaaaaacctaagtggcggaag
aagcttcctggatacacagatgcggccctgcaggaagcccaggaaatctttggtgtggac
tttgactatgatgaatttgagaaatacaatgagtatgatgaagaactggaggaagagtat
gagtatgaggatgatgaggctgagggtgaaatccgagtacgccccaagaagaccaccaag
aagcgtgtgagccgaaggagcatctttgaaatgtatgagcccagtgagctggaaagcagc
catctcacagatcaggacaatgaaatcagagccactgacctgcctgagaggttccagctc
cgctccatcccagtcaagggggctgaagatgatgaactagaagaagaagctgactggatc
tacaggaatgcttttgccacaccaaccatttctctccaggaaagctgtgattacctagac
cgagggcaaccagccagcagcttcagtcggaaagggcccagcacaattcagaagatcaaa
gaggccctgggcttcatgcgaaatcagcattttgaggtgccttttattgccttctaccga
aaggagtatgtggagcctgagttgcacatcaatgacttgtggagagtctggcagtgggat
gaaaagtggacccagctgaggatccgtaaagagaacctaacacggctgtttgagaagatg
caggcttatcagtatgagcagatctctgctgaccctgacaaacctcttgccgatggcatc
cgggctttggataccactgacatggagagactcaaggatgtccagtcaatggatgagctg
aaagatgtctacaatcattttcttctttattatggtcgagacatccccaagatgcagaat
gctgccaaggctagccgcaagaagctgaagcgtgtaagggaagagggagatgaagaaggc
gaaggtgaggaagcagaagatgaggagcagaggggccccgagctcaagcaggcctctcgc
cgagacatgtacaccatctgccagagtgctgggctagatggcctggccaaaaagtttggg
cttactcctgaacagtttggggagaacctccgggacagttaccagcggcacgagacagag
cagtttcctgcagagcccttggagctggccaaggattatgtttgcagccagttccctact
ccagaggctgtgctagaaggcgctcgctacatggtagccctgcagattgcccgtgagcct
cttgtccggcaggtgctgaggcaaaccttccaagagagagccaagctaaacataaccccc
accaagaaaggtagaaaggatgtagatgaggcccactatgcctattccttcaagtactta
aagaacaagccggttaaggaactgagagatgaccagttcctcaagatatgcctggctgaa
gatgaagggctgctcaccattgacatcagcatagatatgaagggagtggaaggttatggc
aatgaccagacatattttgaagagataaaacagttttactaccgagatgagttcagccac
caggtgcaggagtggaaccggcaacgcaccatggccatcgaacgggctttacagcagttc
ctctatgtgcagatggccaaggaactcaagaacaagctgctggctgaagccaaggaatat
gttataaaggcctgtagtcgaaagctctacaactggttgagagtggcaccctaccgacca
gatcagcaggtggaggaagatgacgactttatggacgagaaccaagggaagggtattcga
gtccttggcattgctttctcctctgccagagatcacccagtgttctgcgccctagtcaat
ggtgaaggagaagtgacagacttccttcgactgccccattttaccaaacggcgaactgcg
tggagagaggaagagcgagaaaagaaggctcaagacattgaaacactaaagaaatttctc
ctgaataagaagcctcatgtggtgacagttgcaggagagaacagggacgcccagatgttg
attgaagatgtgaagcgcattgtacatgagctggaccagggccagcagctgtcatctatt
ggggtagaactggttgacaacgagttggccattctctatatgaacagcaagaagtcagag
gcagagttccgggattaccctccagtgctgagacaggctgtctccctggcccggcgcatc
caggaccctctgattgaatttgcccaggtgtgcagctccgatgaagacatcctgtgtctc
aagtttcaccccttgcaggagcatgtggtgaaagaggagctgctcaacgccttgtactgt
gaatttatcaaccgagtcaatgaggttggggtcgatgtcaaccgtgccattgcccaccct
tacagccaggccttgatccaatatgtttgtggcctgggacctcggaaagggacccacctc
ctgaagatcctgaagcagaacaacacccggctcgagagccggacccagctggttaccatg
tgccacatgggtcccaaagtcttcatgaattgtgccggcttcctcaagatcgacacggcc
tccctgggggacagcaccgactcatatattgaagttcttgatggttcccgcgttcaccct
gagacctatgagtgggctaggaagatggcagtggatgccctggaatacgatgagtcagcc
gaggatgccaatcctgcaggagcccttgaagaaatcttggaaaacccagagcgactcaaa
gacctggaccttgatgcctttgcagaagagctggagaggcagggctatggtgacaaacac
atcacactgtatgacatccgggcagagctaagctgtcggtataaggacctccggacagcc
taccgctctcccaacacagaagagatcttcaatatgttaaccaaagaaacaccagagacc
ttctacattggaaagctcatcatctgcaatgtcactggcatcgcccacaggcgtccccag
ggtgagagctatgaccaggcgatccgaaatgatgaaacagggctatggcagtgccccttc
tgtcagcaggacaatttccctgaattaagtgaggtctggaaccactttgacagcggttca
tgcccaggccaggccatcggtgtcaaaacacggctagacaatggtgtcaccggcttcatc
cccaccaaattcctcagtgataaagtggtaaagcggccagaagaacgagtaaaggtagga
atgactgttcactgccgcatcatgaagattgacattgagaagttcagtgcagacctgacc
tgccgcacctcagacctcatggacagaaacaatgagtggaagctgcccaaggacacctac
tatgactttgatgctgaagctgcagaccacaagcaggaggaggacatgaagcggaagcag
cagcgaaccacatacatcaagagagtgatcgcacacccatccttccataatatcaatttc
aagcaagcagaaaagatgatggagaccatggaccagggtgatgtgattatccgaccaagc
agcaagggtgagaaccacctgacagtgacctggaaagtcagtgatggcatctaccagcat
gtggatgtgcgggaggagggcaaggaaaatgccttcagcctgggagccactctgtggatc
aacagtgaggaatttgaagatttggatgagattgttgctcgatatgtccagcccatggca
tccttcgcccgggaccttctgaaccacaagtattatcaggactgcagcggtggggaccgc
aagaaattagaggagctgctcatcaaaactaagaaggagaagcccaccttcatcccctat
ttcatctgtgcctgcaaggaactgcccggcaagttcctactgggataccagccccggggt
aaacccaggatagaatatgtaacggtgactccagagggattccggtaccggggccagatc
ttcccaaccgtgaatggactcttcagatggtttaaggatcactaccaggatcctgtacca
ggcatcacccctagcagcagcagcaggacccggacacctgcctctatcaatgctacccca
gccaacatcaaccttgcagatctgacacgggccgtgaatgccctgccccagaacatgact
tcacagatgttcagtgccattgctgcggtgacaggccaaggacagaaccctaatgccacc
ccagcccagtgggcctccagccagtatggctatggcggcagtggaggcggtagcagtgct
taccacgtattcccaacgccagcccagcagccagtggccacaccactgatgacccctagc
tactcctacacaaccccaagccagcccatcaccacccctcagtaccaccagctccaggcc
agcaccaccccacagtcggcccaggcccagccccagccctcctccagctcccggcaacgg
caacagcagccaaagtccaacagccatgcagccatcgactggggaaagatggcggagcag
tggctgcaggagaaggaggcagaacggcggaaacagaagcaacggctgacacctcggccc
tcccccagccccatgatcgaaagcacccccatgtccattgctggcgatgccaccccactc
ctggacgagatggatcggtag
DBGET
integrated database retrieval system
