Callithrix jacchus (white-tufted-ear marmoset): 100407370
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Entry
100407370 CDS
T03264
Symbol
SOX1
Name
(RefSeq) transcription factor SOX-1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjc03000
]
100407370 (SOX1)
Transcription factors [BR:
cjc03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
100407370 (SOX1)
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Ortholog
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
100407370
NCBI-ProteinID:
XP_009002780
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All DBs
Position
1:26947096..26950417
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AA seq
390 aa
AA seq
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MYSMMMETDLHSPGGAQAPTNLSGPAGAGGGGGGGGGGGGGGGGGTKANQDRVKRPMNAF
MVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDY
KYRPRRKTKTLLKKDKYSLAGGLLAAGAGGGGAAVAMGVGVGVGAAAVGQRLESPGGAAG
GGYAHVNGWANGAYPGSVAAAAAAAAMMQEAQLAYGQHPGAGGAHPHAHPAHPHPHHPHA
HPHNPQPMHRYDMGALQYSPISNSQGYMSASPSGYGGLPYGAAAAAAAAAGGAHQNSAVA
AAAAAAAASSGALGALGSLVKSEPSGSPPAPAHSRAPCPGDLREMISMYLPAGEGGDPAA
AAAQSRLHSLPQHYQGAGAGVNGTVPLTHI
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatgatgatggagaccgacctgcactcgcccggcggcgcccaggcccccacg
aacctctcgggccccgccggggcaggcggcggcggcggcggaggcgggggcggaggcggg
ggcggcggcgggggcaccaaggccaaccaggaccgggtcaagcggcccatgaacgccttc
atggtgtggtcccgcgggcagcggcgcaagatggcccaggagaaccccaagatgcacaac
tcggagatcagcaagcgcctgggcgccgagtggaaggtcatgtccgaggccgagaagcgg
ccgttcatcgacgaggccaagcggctgcgcgcgctgcacatgaaggagcacccggattac
aagtaccggccgcgccgcaagaccaagacgctgctcaagaaggacaagtattcgctggcc
ggcgggctcctggcggccggcgcgggcggcggcggcgcggccgtggccatgggcgtgggt
gtgggcgtgggcgcggcggccgtgggccagcgcctggagagcccgggcggcgcggcgggc
ggcggctacgcgcacgtcaacggctgggccaacggcgcctacccgggctcggtggctgcg
gcggcggcggccgcggccatgatgcaggaggcgcagctggcctacgggcagcacccgggc
gcgggtggcgcgcacccgcacgcgcaccccgcgcacccgcatccgcaccacccgcacgcg
catccgcacaatccgcagcccatgcaccgctacgacatgggcgcgctgcagtacagcccc
atctccaactcgcagggctacatgagcgcatcgccttcgggctacggcggcctcccctac
ggcgccgcggccgccgccgccgccgccgcgggcggcgcgcaccagaactcggccgtggcg
gcggcggcggcggcggcggccgcgtcgtcgggcgccctgggcgcgctgggctcgctggtc
aagtcggagccgagcggcagcccgcctgcccctgcgcactcgcgggcgccgtgccccggg
gacctgcgcgagatgatcagcatgtacttgcccgcgggcgaggggggcgacccagcggcg
gccgcggcgcagagccggctgcattcgctgccgcagcactaccagggcgcgggcgcgggc
gtcaacggcacggtgcccctgacgcacatctag
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