Callithrix jacchus (white-tufted-ear marmoset): 100407719
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Entry
100407719 CDS
T03264
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X2
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100407719 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjc03019
]
100407719 (PATL1)
Messenger RNA biogenesis [BR:
cjc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100407719 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
100407719 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
DUF8825
Motif
Other DBs
NCBI-GeneID:
100407719
NCBI-ProteinID:
XP_002755433
Ensembl:
ENSCJAG00000016192
UniProt:
F7IC02
LinkDB
All DBs
Position
11:complement(113727578..113759751)
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AA seq
770 aa
AA seq
DB search
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
PVAVNVQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGS
LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRSTSP
IIGSPPVRAVPIGTPPKQMAVPSFTQQILCPKPVHVRPPMPPRYPAPYGERMSPNQLCSV
PNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKL
LQGRVGQMLPPAPGFRAFFSAPPSATPPPHQHPPGPGPHLQNLRSQAPMFRPDTTHLHPQ
HRRLLHQRQQQNRNQHRNLNGAGDRGSHRSSHQDHLRKDPYANLMLQREKDWVSKIQMMQ
LQSTDPYLDDFYYQNYFEKLEKLSAAEEIQGDGPKKERTKLITPQVAKLEHAYKPVQFEG
SLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYE
RRYLLSLEEERPALMDERKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARI
LPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVTITSLLQQLM
NLPQSAATPAPSNPHLTAVLQNKFGLSLLLVLLSRGEDLQSSDPTTESTRNNQWTEVMFM
ATRELLRIPQAALAKPISIPTNLVSLFSRYVDQQKLNLLETKLQLVQGIR
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctacgagtctttggaggattgtcctctggatgaagatgaagatgcatttcag
ggacttggagaagaagatgaagagattgatcaattcaatgatgatacatttgggtcaggt
gcagttgatgatgattggcaggaagcacatgagcgcctagctgaattggaagaaaagcta
ccagtggcagttaatgtacaaacaggcaatggagagagagatgaaatggatttgttgggt
gaccatgaggagaatctggcagaaaggctcagtaagatggtgattgaaaatgaactggaa
gatccagctatcatgagggcagtgcagaccaggccagttttacaaccccaaccaggaagt
ctgaattccagtatctgggatggatctgaagttctgaggcgaatccgaggaccgctgctt
gctcaggaaatgcctacagtgtctgtattagaatatgccttgcctcagaggcccccccag
ggtccagaagatgatcgagacctttctgaacgtgcattaccaaggcggtcaacttcacct
atcattgggagtcctcccgttagagccgtccccataggcaccccacctaagcagatggct
gtacccagcttcacccaacagattctgtgtccgaagcctgtccatgttcggcccccaatg
ccaccacgttatcctgctccctatggtgagaggatgtctccaaaccagctctgcagtgtc
ccgaactcttccctcctgggtcacccttttcctcctagtgttcctcctgttctcagcccc
cttcagagagcacagcttcttggaggagcacagctacagcctggacggatgtctcccagc
cagtttgcacgggtccctggatttgttggtagtccacttgctgccatgaatcccaagtta
ctacaggggcgagttgggcagatgcttcccccagcaccaggcttccgtgccttctttagt
gctccaccctctgctacaccacctccacaccagcaccctcctggtccaggacctcacctg
caaaacctaagatctcaggccccaatgtttagaccggacacaactcaccttcatccacag
caccgtcgactcttgcatcagagacagcaacagaatagaaatcagcatcggaatctcaat
ggtgcaggagatagaggaagtcaccggagcagtcatcaagatcatctccgaaaggatcca
tacgccaatctcatgttgcagagggaaaaggattgggtctctaaaatccagatgatgcaa
ctgcaaagcactgatccctacctggatgatttttattaccagaattactttgaaaaactg
gagaaactgtcagctgctgaagaaatacaaggtgatggccctaaaaaggagcgcaccaag
cttatcacccctcaggtggccaaactggagcacgcctataagccagtacaatttgagggc
tctttgggaaagcttactgtttctagtgtgaataatccccgaaaaatgattgatgctgtt
gtgacatctcggagtgaggatgatgagactaaagaaaaacaagttcgagacaagaggaga
aaaacccttgtcataattgagaaaacctacagtttactccttgatgtagaggactatgaa
agacgttatctcctaagtctagaagaagagcgacctgccctaatggatgagagaaagcac
aaaatttgtagcatgtatgacaacttaagggggaaattgcctggacaagaaaggcctagc
gatgaccactttgtacagatcatgtgtatccgaaaagggaaaagaatggttgcccgtatt
cttcctttcctctccacagagcaagcagctgacattctcatgacaacagccaggaacctc
cctttccttatcaagaaggatgcacaagatgaggtgctgccatgcttactgagtcccttc
tctctcctcctctatcatcttccatcagtgactatcaccagccttttgcaacagctaatg
aacctacctcaaagtgcagctacaccagcaccctccaatcctcacctcactgctgtgctc
cagaacaagtttggcctgtcactgctccttgtcctcctgagccgtggggaagacctacag
agttcagaccctactacagaatcaacgcgaaataatcagtggacggaggtgatgtttatg
gcaacacgagaacttctacggattccccaagcagccctggccaagccaatctctatacct
acaaacctagtgtccctcttttctcgctacgttgaccagcagaaactgaacttgctggag
acaaaactgcagctagttcaggggatacgatag
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integrated database retrieval system
