Callithrix jacchus (white-tufted-ear marmoset): 100407758
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Entry
100407758 CDS
T03264
Name
(RefSeq) collagen alpha-6(VI) chain
KO
K06238
collagen type VI alpha
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04151
PI3K-Akt signaling pathway
cjc04510
Focal adhesion
cjc04512
ECM-receptor interaction
cjc04820
Cytoskeleton in muscle cells
cjc04974
Protein digestion and absorption
cjc05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100407758
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100407758
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100407758
09142 Cell motility
04820 Cytoskeleton in muscle cells
100407758
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100407758
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
100407758
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cjc04147
]
100407758
00536 Glycosaminoglycan binding proteins [BR:
cjc00536
]
100407758
Exosome [BR:
cjc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100407758
Glycosaminoglycan binding proteins [BR:
cjc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100407758
Hyaluronan
Extracellular matrix or blood plasma proteins
100407758
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
Radical_SAM
Motif
Other DBs
NCBI-GeneID:
100407758
NCBI-ProteinID:
XP_002759733
Ensembl:
ENSCJAG00000003330
LinkDB
All DBs
Position
17:complement(46572325..46727728)
Genome browser
AA seq
2292 aa
AA seq
DB search
MDCFLYGTSQTRRFQVEDFFCHNMKMLLILFLMIICFHVSLNQDSGPKYADVVFLLDSSD
HLGSKSFPFVKMFITKMINSLPIEADKYRVALAQYSDKLHSEFHLSTFKGRNPMLNHLKK
NFQFLGGSLQIGKALQEAHRTYFSAPTNGRDRKQFPPILVVLASAESEDDVEEASKALQK
DGVKIISVGVQDASEENLKAMATSHFHFNLRTVRDLSTFSQNMTQIIKDVTKYKEGAVDD
ILVEVCQGPSVADVVFLLDVSVNGSEENFDFLKEFLEESVSALDIKENCMRVGLVAYSNE
TKVINSLSMGINKSEILRNIQNLSPQTGNAYTGAAIKKLRKEVFSARNGSRKNQGVPQIA
VLVTHRASEDNVTKAAVNLRREGVAIFTLGIEGARDSQLEKIASHPAEQYVSKLKTFADL
AAHNQTFLKKLRNQITHTVSVFSERTETLKSGCVDTEEADIYLLIDGSGSTQATDFHEMK
SFLSEVVGMFNIAPHKVRVGAVQYADSWDLEFEINKYSNKQDLGKAIENIRQMGGNTNTG
AALNFTLSLLQKAKQQRGNKVPCHLVVLTNGMSKDSILEPANRLREEHIRVYAIGVKEAN
KTQLREIAGEEKRVYYVHDFDALKDIRNQVVQEICAEEACKEMKADIMFLVDSSGSIGPE
NFSKMKTFMKNLVSKSQIGANRVQIGVVQFSGVNKEEFQLNRFMSQSDISNAIDQMVHIG
ETTLTGSALSFVSQYFSPTKGARPNVRKFLILITDGEAQDVVKEPAVALRQEGIIIYSVG
VFGSNVTQLEEISGRPEMVFYVENFDILQHIEDDLVFGICSPQEECKRIEILDVVFVIDS
SGSIDHDEYNIMKDFMIGLVKKADVGKNRVRFGALKYADDPEVLFYLGDFDTKLEVISVL
QNDQPMGGNTYTSEALGFSDHMFTEAQGSRLNKGVPQVLIVITDGESHDADKLNATAKAL
RDKGILVLAVGIAGANPVELLAMAGSSDKYFFVETFGGLKGIFSDVTASVCNSSKVDCEI
DKVDLVFLMDGSNSIHSSDFTKMKEFLVSVVQDFDVSLNRVRIGAAQFSHNYRQEFPLGT
FIGEKEISFQIENIQQLGGNTHIGDALRQVGHYFRPDMGSRINTGTPQVLLVLTDGQSQD
EVAQAAEALRHRGIDIYSVGIGDVDDQQLIQITGAAEKKLTVHNFDELKKVKKRIVRNIC
TTGGESNCFVDVVVGFDVSTQEKGQTLLEGQPWMETYLQDILRAISSLNGVSCEVGTETQ
VSVAFQVTNAIEKYSPKFEIYSENILNSLKDVTVKGPSVLDANLLNSLWDTFQNKSAARG
KVVLLFSDGLDDDVEKLEQKSDELRKEGLNALITVAVDGPADSSDLADLPYIEFGKGFEY
RTQLSIGMRDLGSRLSKQLVNVAERTCCCLFCKCIGEDGTMGDSGPSGKKGPPGFKGSEG
YLGEEGIAGDRGAPGPVGEQGTKGCHGTKGPKGNRGLNGQEGEAGESGIDGLNGEQGDNG
LPGSKGEKGDEGSQGSPGKRGTPGDRGAKGLRGDPGAPGVDNSIEGPAGLKGERGRQGRR
GWPGPPGTPGSRRKTAANGRRGPTGPQGRTGIPGPDGLEGSLGLKGPQGSRGEAGVKGEK
GGVGSKGPQGPPGPGGETGNQGRLGSQGNKGEPGDPGEKGVVGFPGPRGLQGDDGSPGYG
SVGRKGAKGQEGFPGESGPKGETGDPGSPGEMGLKGARGTTMSAGLPGEMGSPGEPGHPG
RKGVKGAKGLASFSTCELIQYVRDRSPGGHGKPECPVHPTELVFALDQSRDVTEQEFERM
KEMMAFLVRDIKVRENSCPVGARIAILSYNSHARHLVRFSDAYKKNRLLREIEAIPYERS
PASREIGRAMRFISRNVFKRTLPGAHTRRIATFFSSGQSADAQSITTATMEFSALDIIPV
VITFSNVPSVRRSFAIDDTGTFQVIVVPSGTDYIPALERIQRCTFCYDVCKPDAACDQAR
PPPVQSYIDAAFLLDGSRHMGSAEFEDIRAFLGTLLDYFEITPEPETSITGDRVALLSHA
PRDFLPNTQKSPVRAEFNLTTYSSKRLMKRHVKESVKQLNGDAFIGHALQWTLDNVFLST
PNLRKNKVIFVISAGETSHLDGEILKKESLRAKCQGYALFVFSLGPTWDDKELEDLASHP
LDHHLVQLGRIHKPDRSYGVKFVKSFINSIRRAINKYPPINFKIKCNRLLSTDPKQPPPL
FRSFVPGPHKATLKEDVLQKAKFFQDKKYLSRVARSGRDDAIQNFIRNTSHIFKNGKRVT
KTALKRHGKKNA
NT seq
6879 nt
NT seq
+upstream
nt +downstream
nt
atggattgttttctctacggcacttcacagactagaagatttcaagttgaagattttttt
tgtcataatatgaaaatgctgctaattttattcctcatgataatttgttttcatgtttct
ctgaaccaagattctggccccaagtatgcagatgttgtgtttctgttggacagctctgat
cacctgggatctaagtccttcccatttgtgaaaatgttcatcaccaaaatgatcaacagt
ctccccatagaggctgacaaataccgtgtggccctggcccagtacagcgacaagcttcac
agtgaattccacctgagcaccttcaaaggcaggaatcccatgctgaaccacctcaagaag
aactttcagttccttggtgggtccctgcagataggaaaggctcttcaggaggctcacagg
acctatttctctgcacccacaaatgggagagacaggaaacagtttcccccaattttggtg
gtcctggcttcggcggaatctgaggatgatgtggaagaggcttcaaaagccctgcagaaa
gacggggtgaaaatcatctctgtgggggtgcaggatgcttctgaggaaaacctgaaggcc
atggccacatcccatttccatttcaaccttcggacagtcagagacctcagcacattctcc
caaaacatgacacagatcatcaaggatgtaacaaagtacaaggagggggcagttgatgac
atccttgtagaagtttgccagggcccttctgtggctgatgttgtgttcctgttggatgtg
tcagtcaatggaagcgaggagaactttgactttcttaaagaattcttggaagaaagtgta
tctgcccttgacataaaggaaaattgcatgagggttggccttgtggcctatagcaatgag
acaaaagtgataaattcactgagcatgggcataaataagtcagagattctccggaatata
cagaacctctctccccaaactgggaacgcctacactggagctgccatcaaaaagctcagg
aaggaagtctttagtgcacggaatggcagtcggaagaatcagggggtgccccagattgcc
gtgctggtgacccaccgagcttcggaagacaacgtgacaaaagcagctgttaacctccga
cgggagggtgtggccatcttcaccctgggcatagagggggccagagacagccagttggaa
aagatagcatcccatcctgctgagcagtatgtctccaagctgaagaccttcgccgacctg
gctgctcacaaccagacatttctgaagaagttgcggaaccaaataacacacacagtctct
gtcttttcagagcggaccgaaacgctcaaatctggttgtgtggacactgaggaagcagac
atctatctgctcatcgatggctcagggagcactcaggccacagatttccatgaaatgaag
tccttcctgtcggaggtggtagggatgttcaacattgctccccataaggtgcgggttggg
gccgttcagtacgctgacagctgggacttggaatttgagatcaataaatattccaacaag
caggatttgggtaaggccattgagaatatcagacagatgggtgggaatacaaacacaggc
gcagcactgaatttcacactgagtctgttgcaaaaagcaaagcagcagcgaggaaacaaa
gtgccgtgtcaccttgttgtcctgacaaatggcatgtccaaggatagcatcttggagcct
gcaaacagactgagagaagagcacattcgagtctatgctatcggggtcaaggaggccaac
aaaacacagctgcgagaaattgcaggagaggaaaaaagagtgtattatgtgcatgacttt
gacgcactgaaagacataagaaaccaagttgttcaagaaatctgtgctgaggaagcttgc
aaagagatgaaagctgacatcatgtttctggtggacagttctggaagtataggacctgaa
aacttcagcaaaatgaaaacctttatgaagaacctggtgagcaaatctcagattggagca
aatcgggtgcaaattggtgtagtccagttcagtggcgtcaataaggaggaatttcagctc
aacagattcatgtcccaaagcgacatttcaaatgcaatagaccaaatggttcacattgga
gaaaccaccttgactggtagcgccctgagctttgtgtctcagtacttcagccccaccaag
ggcgcccggcccaatgtcagaaagtttctcatcctcatcacggatggtgaagctcaggac
gtagtaaaggaaccagcggtagcgcttcgacaagaaggcataatcatctactctgtggga
gtgtttggctccaatgtcacccagctcgaagagatcagcgggaggcccgagatggttttt
tatgttgagaattttgacattctgcagcacattgaagatgatcttgtttttggaatatgc
agcccccaggaagaatgcaagcggattgaaattttagacgttgtgtttgtcatcgatagc
tctggcagtattgaccatgatgagtataatatcatgaaggattttatgattggcttagtg
aaaaaagctgatgtgggcaagaatcgggtccggtttggggctctcaagtacgctgatgac
ccagaggtactgttttatctgggtgactttgacacaaaactggaggtcatttcagtactc
cagaatgaccagcccatgggtggcaatacttacacttctgaggcactgggcttctcagac
cacatgttcaccgaagcccagggcagccgcctgaacaagggggtcccccaagtcctcatt
gtgatcaccgacggggaatcccatgatgctgataaactcaatgccacagcaaaggccttg
cgtgacaaaggcattcttgtcctggctgtggggattgctggtgccaatcccgtggagctg
ttagccatggcaggatcaagtgacaagtacttctttgtggagacttttggaggtctgaag
ggaatattttcagatgtgacagccagtgtctgtaactcttcaaaagtagattgtgaaatt
gacaaagtagatctcgttttccttatggatggttcaaatagcattcactcaagtgacttc
acgaagatgaaggaatttctggtatctgtcgttcaagactttgatgtcagcctcaacaga
gtgcgtataggagccgcacagtttagccataactatcgccaggagtttccactaggaact
ttcataggtgaaaaggagatatcatttcagattgaaaacatccagcagctcggcggaaac
acgcacatcggtgatgcactcaggcaggtgggacattacttccggccagacatgggcagc
aggataaatactggtaccccacaggtgctgctggtccttacagatggccagtcccaagac
gaggtggcccaggctgcggaagcactgagacacagaggcatcgacatctactccgtgggc
attggggatgtagatgaccagcaactcattcagatcaccggggccgcagagaaaaaactg
actgtgcacaacttcgacgaactgaagaaggtcaaaaaaaggatcgttcgcaacatctgt
accacagggggtgagagcaactgtttcgtggatgttgtggtgggatttgatgtctcaact
caggagaaagggcagactttgctcgaaggtcagccttggatggaaacctaccttcaagac
atcttacgtgccatcagctccctcaatggagtaagctgtgaggtgggcacagagactcag
gtcagtgtggcttttcaagtgacaaatgccatagaaaaatattctcccaaatttgagatc
tacagtgaaaacatactgaacagcttgaaggatgtaacagttaaaggaccatctgttctc
gatgcaaacctcttgaattctctatgggatacatttcagaataaatcagctgctcgagga
aaggtggtccttttattttcagatggattggatgatgatgttgagaaacttgaacaaaaa
tctgatgaacttagaaaagaaggcctgaatgccctcatcactgttgctgtggatggacct
gctgattccagtgacttggctgatcttccctatattgaatttgggaaaggttttgagtac
aggacacagctctctattggcatgagagatcttgggagccggctgtcaaagcagctggtc
aatgttgcagaaaggacatgctgctgtttgttttgcaagtgcattggagaagatggcacc
atgggagattcgggaccatcaggaaaaaagggacctccaggttttaaaggcagtgaaggc
tacttgggagaagagggaattgctggagacagaggagcccctggaccagtgggagagcag
ggtactaagggatgccatggcaccaaaggtcctaagggaaacaggggactaaatggacag
gagggagaagctggggaaagtggaattgatggattaaacggagaacagggtgataatggt
cttcctggaagtaaaggagaaaagggtgatgagggatcccagggaagcccagggaagaga
gggactcctggtgaccgtggcgcaaagggcctgcgaggggatcccggagctcctggtgtt
gataatagcatagaaggacctgcaggcttgaaaggagaacgtggaagacaaggaagaaga
ggttggccaggccccccagggacaccaggctccagaagaaagacagcagctaatggcaga
aggggacctacaggcccacagggaagaacagggatcccaggaccagatggacttgaaggc
tccctgggacttaagggccctcagggctcaagaggagaggctggtgtgaaaggagaaaaa
ggaggcgtgggaagtaaaggtccccaggggcccccaggacccggaggagaaacagggaat
caaggccgtttgggaagccaaggaaataaaggagaacctggagatccgggagaaaaagga
gtggttggttttcctggtcctcgtggcttacagggcgatgatggcagtccaggttatggt
agtgttggacgtaagggagcaaagggacaagaaggattccctggagaaagtggacctaag
ggtgagactggggaccctggtagtccaggagagatggggctgaaaggagctagaggcaca
acgatgtctgctgggcttccaggagagatgggatcccctggggaaccaggacaccctgga
cgtaagggtgtgaaaggagccaaaggcttggcttcattttctacatgtgagctcattcag
tatgtgcgggaccgcagtcctggaggacatggaaaacccgaatgcccagtgcacccaacc
gagttggtgtttgccttggaccagtcccgggatgtcactgagcaggaatttgagcggatg
aaggagatgatggctttcctggtgagagacattaaagtccgggagaacagctgccccgtg
ggagcgcgcattgccatcctctcctataactcccacgccaggcacctcgtgcgcttctca
gacgcctacaagaagaatcgacttctcagggaaattgaagctattccttatgagagatcc
cctgccagccgggagatcggcagagcaatgaggtttatttccaggaatgtcttcaagcgg
acgcttccaggggcgcacacaagaagaatcgccacatttttcagcagtggtcagtctgca
gatgcccagtccatcaccacggccaccatggagttcagtgcgcttgacatcattcccgtc
gtgatcactttcagcaacgtgccctccgtcaggcgttcatttgcgattgacgacactggc
acatttcaagtaatagtggttccttcagggactgactacataccagcattagagagaatc
cagcggtgcactttctgctatgatgtatgcaagccagatgccgcttgtgaccaagccaga
ccaccccctgtgcagtcttacatagatgctgctttccttctggatggttcccggcacatg
ggaagtgccgaatttgaagacatcagagccttcctgggaacactattagattactttgaa
atcaccccagagccggagacttctatcactggagaccgggtggccctattgagccatgct
ccccgtgactttctgcccaacactcagaagagtccagtcagagctgagttcaatcttacc
acctacagcagtaagcgcctcatgaagaggcacgtgaaggagtcagttaaacaactaaac
ggagatgctttcattggtcatgccttacagtggactctggacaatgtctttttaagtaca
cccaatctgagaaaaaacaaagtcatatttgtgatatctgctggggaaaccagccattta
gatggggaaatcttaaagaaggaatccttgcgagccaaatgtcaggggtatgccctattt
gtgttttcccttggccctacttgggatgataaggaactggaggatctcgccagtcaccct
ttggatcaccatctggttcagcttggccgaattcataaaccagaccgcagttatggtgtg
aagtttgtgaagtcctttataaactcaatcaggcgtgcaatcaacaaatatccaccaata
aacttcaaaataaagtgcaatagacttctctctacagatccaaagcaacccccaccactg
ttccgaagctttgttcctggaccacataaagctaccctgaaagaagatgtgttacagaag
gcaaaattctttcaagataaaaaatacctttcaagagtagcaagaagtggcagagatgat
gctattcaaaattttatcagaaacacctcccacatttttaagaatggaaaaagggtgaca
aaaactgctcttaaacgacacggtaaaaaaaatgcttga
DBGET
integrated database retrieval system
