Callithrix jacchus (white-tufted-ear marmoset): 100408223
Help
Entry
100408223 CDS
T03264
Symbol
SYNPO
Name
(RefSeq) synaptopodin isoform X1
KO
K21112
synaptopodin
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
100408223 (SYNPO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Calsarcin
Motif
Other DBs
NCBI-GeneID:
100408223
NCBI-ProteinID:
XP_008986165
Ensembl:
ENSCJAG00000020969
LinkDB
All DBs
Position
2:47378955..47436739
Genome browser
AA seq
1143 aa
AA seq
DB search
MLGPHLPPPPLAPSEGRLTPCTFQIPDGSYRCLALEAEGSSGEEGLQGEAGPTDLGEDDG
VSRSEDNSACRVTQGTPQLPTALGIQPSSCSREEQMASQHNGRASQDWDVVKARQVMTVG
PSPGPGPRAAQKPALGRSTSLTEKDLKEAKVRSQQIAAQLTTPPSSNSRGVQLFNRRRQR
VNEFTLESHGPRGQKPSQESLRVLPASPHDSGHAPGLSLSSTSLPEPGPPRHPSPQSPDR
GVPGHSMEGYSEEASLLRHLEKVASEEEEVPLVVYLKENAALLTANGLHLSQNREAQQSS
PAPPPAEVHSPAADVNQNLASPSATLTTAASNSSHNLPATDVNQNPPATAIPQSLPLSSI
QQNSSEAQLPSNGTVPASKPSTLCADGQPQAPAEEVRCSTLLIDKVSTPAPATSTFSREA
TLIPSSRPPASDFMSSSLLIDIQPNTLVVSADQEMSGRAAATTPTKVYSEVHFTLAKPPS
VVNRTARPFGIQAPGGTSQMERSPMLERRHFGEKAPAPQPPSVPDRSPRPQRHIMSCSPM
VERRLMGQRSPASERRPLGNFTPPPTYAETLSTAPLASWVRSPPSYSALYPSSDPKSSHL
KGQVVSTSKTGILEESMARRGSRKSMFTFVEKPKVTPNPDLLDLVQTADEKRRQRDQGEV
GVEEEPFALGAEASNFQQEPAPRDRASPAVAEEAVPEWASCLKSPRIQAKPKPKPNQNLS
EASGKGAELYARRQSRMEKYVIESSSHTPELARCPSPTMSLPSSWKYPTNAPGAFRVASR
SPARTPPASLYHGFLPENGVLRPEPTKQPPYQLRPSLFVLSPIKEPAKVSPRAASPVKPT
SLDLVPNLPKGCLPPSPALSRASRSSPGLYTSPGQDSLQPTAMSPPYGGDISPVSPSRAW
SPRAKQAPRPSFSTRNAGIEAQDRRESLPTSPPWTPGASRPPSSLDGWVSPGPWEPGRGS
SMSSPPPLPPPMSPSWSERSVSPLRPETEARPPSRQLQALLARNIINAARRKSASPRPAG
TESLRPFSPPRAPLPPPPPPRMRSPQPARRGPAAVPRAAFAPILRSPLPPGPSSCTSPRS
PLPAPPRPFLYRRSPTDSDVSLDSEDSGAKSPGILGYNICPRGWNGSLRLKRGSLPAEAS
CTT
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgctggggcctcacctcccacctcctccccttgcgcccagcgaagggaggcttaccccc
tgcaccttccagatccctgatggaagctacaggtgtctggctctggaagccgaagggagc
agcggtgaggagggcctgcagggagaggcagggcccactgacctgggagaagatgacggg
gtcagcaggagtgaggacaactctgcctgcagagtcacgcaggggacaccacagctgccc
acagccctgggcatccaaccatccagctgctccagagaggaacaaatggcgtcccagcac
aatggcagggccagccaggactgggatgtagtgaaggcccggcaggtgatgacagtcggc
cccagccctggcccagggcccagagcagcccagaaaccagcgttgggccggagcactagc
ctcacagagaaggatctgaaagaggccaaggtgcggagccagcagatcgcagcccagctg
accacccctcccagctccaattcccgtggtgtccagctcttcaacaggcgccggcagagg
gtgaacgagttcactttggagagccacggcccaaggggacagaagcccagccaggagtcc
ctcagggtgctccctgcaagccctcatgactcaggtcatgccccagggctcagcctgagt
tccacctcgctgccggagccaggccctccacggcaccccagtccccagagccccgacaga
ggggtccctggccacagcatggaggggtactcagaggaggctagcttgctccggcacctg
gagaaggtggccagtgaggaggaagaggtgccactggtggtttatctaaaggagaatgcg
gcactgctgacggccaatgggctccacctgtcccaaaaccgagaggcccagcagtcctca
ccggccccacctccggcggaggtccacagcccggctgcagatgtcaaccaaaaccttgcc
tcacccagtgccacactcaccacagcagcttctaacagcagccacaacctgccagccact
gatgtcaatcagaaccccccggcaactgccatcccacagagcctgccactttctagcatc
caacagaattcctcagaggcccaactcccatcaaatggcacagtgcctgcttccaaaccc
agcacgctgtgtgctgacgggcaaccccaggcaccggctgaggaggtgagatgcagcacg
ctcctaattgacaaggtgtcgactccagctcccgccaccagcaccttctccagagaagct
acgctcatccccagctccaggcccccagcctcagatttcatgtccagctccctgctcatc
gacatccagcccaacaccctagtggtgtcagcagatcaagagatgtctgggagagcagct
gccaccacgcccaccaaggtatacagtgaggtccacttcacactggccaagcccccatca
gttgtcaacaggacggccaggccttttgggatccaggcgccagggggcaccagccagatg
gagaggagccccatgctagagagacgacattttggggagaaggccccggctccccagccc
ccaagtgtgccagacaggagcccccggccacagagacacataatgtcctgcagccccatg
gtggaaaggaggctgatggggcagcgaagcccggcctcggagagacgccccttggggaac
ttcactccaccccccacctacgctgagaccttgtccacagcccctctggcttcctgggta
aggtctcctccctcttattctgccctgtaccccagctctgaccccaagtcttctcacctg
aagggccaggtggtttccaccagcaagacgggcatcctggaggagtcgatggcccgccgg
ggcagccgcaaatccatgtttacctttgtggagaagcccaaggtgaccccgaatccagac
ctgctggatctggtacagacagcagatgagaagcggcggcagagggaccaaggggaggtg
ggcgtggaggaggagccctttgccctgggggccgaggcctccaacttccagcaggagcca
gcacctcgagacagagccagccctgcagtggcggaagaggcagtcccagagtgggcctcc
tgcctcaagtcaccccgcatccaggccaaaccgaagcccaaacccaaccagaacctctct
gaggcctctgggaaaggggctgagctctatgcacgccgccagtcacggatggagaaatat
gtcatcgagtcttcaagccacacgccggagctggcccgctgcccgtcacccaccatgtcc
ctgccttcgtcctggaaataccccactaacgcccccggggccttccgagtggcatcccga
agcccagcccggaccccacccgcctccctctaccatggctttctgcctgagaacggggtc
ctgcgcccggagcccaccaagcagccgccataccagctgcggccctcactctttgtccta
tcacctatcaaggagcctgccaaggtctctccaagagctgcctcgcccgtcaagcccacc
tccttggacctggtgcccaacctgcccaaggggtgtcttcctccatctcctgccctgtct
cgggcctcgcgatcctcgccgggcctctacacctcccccggccaggacagcctgcagccc
actgccatgagccctccctacggtggtgacatctcccctgtgtctccctccagggcgtgg
tctccccgagccaagcaggcccccaggccctccttctccacccggaatgccgggatcgag
gctcaggaccgccgggagagcctgcccacctcccctccctggacgccaggcgcgtcccgg
ccccccagcagcctggacggctgggtgagcccggggccgtgggagccaggccgcgggagc
agcatgagcagccccccgccgctgccgccgcccatgtctccctcgtggagcgagcgctca
gtgtccccgctgcgacccgagacagaggcgcggccccccagccgccagctgcaggcgctt
ctggcgcgaaacatcatcaacgcggcccggcgcaagagcgcctccccgcggccggcgggc
accgagagcctgcggcccttctccccgccgcgggcgccgctgccgccgccgccgccgccg
cgcatgcgctcgccgcagcccgcccgccgcggcccggccgctgtgccgcgggcagcgttc
gcgcccatcctgcggagcccgctgcccccggggccttcctcctgcactagtccccgaagc
ccgctgcccgcgcctcccaggcccttcctctatcgccgctcgcccacggactccgacgtg
tccctcgattccgaggactccggggctaagtctccgggcatcctcggctacaatatctgc
ccccgcgggtggaacggcagcctgcggctcaagcgtggcagcctccccgccgaggcctcc
tgcaccacctag
DBGET
integrated database retrieval system
