Callithrix jacchus (white-tufted-ear marmoset): 100408254
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Entry
100408254 CDS
T03264
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100408254 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjc03019
]
100408254 (XAB2)
03041 Spliceosome [BR:
cjc03041
]
100408254 (XAB2)
Messenger RNA biogenesis [BR:
cjc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100408254 (XAB2)
Spliceosome [BR:
cjc03041
]
Complex B
Other components
Prp19-related factors
100408254 (XAB2)
Complex C
100408254 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_14
HAT_PRP39_N
TPR_12
TPR_2
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_1
TPR_MalT
TPR_21
TPR_NPHP3
ACR_tran
Motif
Other DBs
NCBI-GeneID:
100408254
NCBI-ProteinID:
XP_035142847
Ensembl:
ENSCJAG00000008568
UniProt:
U3F2E6
LinkDB
All DBs
Position
22:complement(6822967..6836505)
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AA seq
855 aa
AA seq
DB search
MVVMARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGSPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVNFKQVDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTV
KEMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPLRAQSKILFVRSDASREELAELAQQVNPEEIQLGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgactctcgcggcccgagcggccggaccttgtcttcgaggaagag
gacctcccctatgaggaagaaatcatgcggaaccagttctctgtcaaatgctggcttcgc
tacattgagttcaaacagggctccccgaagcccaggctcaatcagctgtacgagcgggca
ctcaagctcctgccttgcagctacaaactctggtaccgatacctgaaggcacgtcgggca
caggtgaagcatcgctgtgtgaccgaccccgcctatgaagatgtcaacaactgtcatgag
agggcctttgtgtttatgcacaagatgccccgtctgtggctagattactgccagttcctg
atggaccaggggcgtgtcacacacacccgccgcaccttcgaccgtgccctccgggcgctg
cccatcacacagcactctcgaatttggcccctgtatctgcgcttcctgcgctcacaccca
ctgcccgagacagctgtgcgtggctaccggcgcttcctcaagctgagtcctgagagcgca
gaggagtacatcgagtacctcaagtcaagtgaccggctggatgaagctgcacagcgcctg
gccacagtggtgaacgacgagcgtttcgtgtccaaggccggcaagtccaactaccagctg
tggcacgagctgtgcgacctcatctcccagaacccggacaaggtccagtccctcaacgtg
gacgccatcatccgtgggggcctcacccgcttcactgaccaactgggcaaactctggtgt
tcactcgccgactactacatccgcagcggccactttgagaaggctcgggacgtgtacgag
gaggccatccggacagtgatgaccgtgcgggacttcacacaggtgtttgacagctacgcc
cagttcgaggagagcatgatcgctgcaaagatggagaccgcctcagagctggggcgtgag
gaggaggacgatgtggacctggagctgcgcctagcccgctttgagcagctcatcagccgg
cggcccctgctcctcaacagcgtcctgctgcgccagaacccacaccacgtgcacgagtgg
cataagcgtgttgccctgcaccagggccgcccccgggagatcatcaacacctacacagag
gctgtgcagacggtggaccccttcaaggccacaggcaagccccacacactgtgggtggca
tttgccaagttttatgaggacaacgggcagctggacgatgcccgtgtcatcctggagaag
gccaccaaggtgaacttcaagcaggtggatgacctggcaagcgtatggtgtcagtgcggg
gagctggagctccggcacgagaactatgacgaggccctgcggctgctgcggaaggccacg
gcgctgcctgcccgccgggctgagtactttgacggctcagagcccgtgcagaaccgtgtg
tacaagtcactgaaggtgtggtccatgctcgctgacctggaggagagcctcggcaccttc
cagtccaccaaggccgtatacgaccgcatcctggacctgcgcatcgcaacaccccagatc
gtcatcaactatgccatgttcctggaagagcacaaatacttcgaggagagcttcaaggcg
tatgagcgcggcatctcgctgttcaagtggcccaatgtgtcggacatctggagcacctac
ctgaccaaattcatcgcccgctatgggggccgcaagctggagcgggcacgggacctgttt
gaacaggctctggatggctgcccaccaaaatatgccaagaccttgtacctgttgtatgcg
cagctggaggaggagtggggcctggcccggcatgccatggccgtgtacgagcgcgccacc
agggccgtggagcctgcgcagcagtacgacatgttcaacatctacatcaagcgggcggcc
gagatctacggagtcacccacacccgaggcatctaccagaaggccatcgaggtgctgtcc
gatgagcatgcacgtgagatgtgcctgcggttcgcagacatggagtgcaagctgggggag
atcgaccgcgcccgggccatctacagcttctgctcccagatctgcgacccccggacgacc
ggggcgttctggcagacatggaaggactttgaggtccggcatggcaacgaggacaccgtc
aaggagatgctgcgcatccggcggagtgtgcaggccacatacaacacacaggtcaacttc
atggcctcgcagatgctcaaggtctccggcagcgccacgggcactgtgtccgacctggcc
cctgggcagagcggcatggatgacatgaagctgttggagcagcgtgcagaacagctggca
gccgaggcagagcgagaccagcccctgcgcgcccagagcaagatcctgttcgtgaggagc
gacgcctccagggaggagctggcagagctggcgcagcaggtcaaccccgaggaaatccag
ctgggcgaggatgaggacgaggacgagatggacctggagcccaacgaggtccggctagag
cagcagagcgtgccagctgccgtgttcgggagcctgaaagaagactga
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integrated database retrieval system
