Callithrix jacchus (white-tufted-ear marmoset): 100408274
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Entry
100408274 CDS
T03264
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100408274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cjc03041
]
100408274
Enzymes [BR:
cjc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100408274
Spliceosome [BR:
cjc03041
]
Complex C
Other components
Step II factors
100408274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_16
TsaE
PhoH
Sigma54_activ_2
Flavi_DEAD
AAA_7
ABC_tran
Motif
Other DBs
NCBI-GeneID:
100408274
NCBI-ProteinID:
XP_035156397
LinkDB
All DBs
Position
5:87060544..87083650
Genome browser
AA seq
692 aa
AA seq
DB search
MRSIGMMPNDIPEWKKHAFGGNKASYGKKTQMSIIEQRESLPICKLKEQLIQAVHDNQIL
IVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRMAAMSVAKRVXGCCLGPEVSYTIR
FEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEVHERTVDTDVLFGLLKKTVQK
WQDMKLIVTSATLDAVKFSQYFYEAPIFAIPGRTYPVEILYTKEPETDYLDVSLITVMQI
YLTEPPGNILVFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDP
APPGNRKVVIATNIAETLLTIDXYYMVDPGFMKQKVYNSKTGIDQLVVTPISQAQAKQRA
GRARRTGPGKCYRLYTERAYXDEMLTTNVLEIQRTNLASTVLSLKAMGTNDLLSFDFMDA
PPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTV
VSMLSVQNVFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQ
ARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFCNAAKKDPQEVTQTLI
NQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDLRWLVEFALAFFKVSDPTK
LSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgagaagtattgggatgatgcccaatgatattcctgagtggaagaaacatgcttttggg
ggcaacaaagcctcttatgggaaaaagacccagatgtcaatcattgagcagagggagagc
ctgcccatctgcaaactgaaggagcagttgatccaggccgtccatgacaatcagatcctg
atagttattggtgagacaggatctggaaagacaacacagatcacccagtacctggcggag
gcaggctacacttccaggggcaagattgggtgtacccagcccagaagaatggcagcaatg
tcagtggccaaaagggttnntggttgttgcttaggcccagaggtgagctacaccattcga
tttgaggactgcactagccctgaaacagtcatcaagtacatgacagatggaatgttgctt
agggagtgcttgattgaccctgacctcactcagtatgcaatcatcatgttggacgaggtg
catgagaggacagttgacactgatgtgctctttggattgttgaaaaagacagttcagaaa
tggcaggacatgaagctgattgtcacctcagccacgttggatgcagtgaagttttctcaa
tacttctatgaagctcccattttcgccatcccaggtcgaacatatccagtggaaatactg
tacacaaaggaacctgagacagattatctggatgtcagcctgattactgttatgcagatc
tatttaacagagccaccaggtaatatcctggtcttcctgactggtcaggaagagattgat
actgcttgcgagatcctgtatgaaagaatgaaatccctgggacctgatgttccggagtta
attatcctcccagtgtactctgctcttcccagtgagatgcagacccgaatctttgaccca
gctccaccaggcaacagaaaggttgtgattgccaccaatatcgcagagacattgctgact
attgatnnctactacatggtggacccaggattcatgaagcagaaagtttataattccaag
acagggattgaccagcttgtggtgacgcctatttctcaggctcaggcaaagcaacgagct
ggcagagctaggagaacaggcccagggaagtgttacagactatatacagaacgtgcctac
tgagatgaaatgctcaccaccaacgtgctggaaatccagagaaccaacttagcaagcacg
gtgctgtcactcaaggccatgggtaccaatgacctgctgtcctttgatttcatggatgcc
ccaccaatggaaactttgatcactgccatggagcagctgtatacactgggggccctggac
gatgagggcctgctcactcgcttgggccgccggatggcagagtttcctctggagccaatg
ctatgcaaaatgctcatcatgtctgtgcatctgggctgcagtgaggaaatgctgaccgtt
gtatccatgctgtctgtgcagaacgtcttctataggcccaaggataaacaagcccttgca
gatcagaagaaggccaaattccaccagaccgaaggggaccacctcaccctgctagctgtg
tacaactcctggaagaataacaagttctccaacccatggtgctatgagaactttatccag
gctcgttccctgcgccgggcccaggacattcgcaagcagatgttaggcataatggacaga
cacaagctggatgttgtttcctgtggcaagtccacagtccgagtacagaaggccatctgc
agtgggttcttctgtaatgccgccaagaaagacccgcaggaggttacccagacgctgatc
aaccagcaggtggtctacatccatccttccagtgccctcttcaacagacagccagaatgg
gtcgtataccatgagctggtgctgaccaccaaggaatacatgcgtgaggttaccaccatc
gacctgcggtggcttgtggagtttgccctggccttcttcaaggtctctgacccaactaag
ctaagcaaacagaagaagcagcagcgtctggaacccttgtacaaccgctatgaggaaccc
aatgcctggagaatatcccgggccttccgacggcgctga
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