Callithrix jacchus (white-tufted-ear marmoset): 100408318
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Entry
100408318 CDS
T03264
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03440
Homologous recombination
cjc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100408318 (PALB2)
03460 Fanconi anemia pathway
100408318 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cjc03400
]
100408318 (PALB2)
DNA repair and recombination proteins [BR:
cjc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
100408318 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
100408318 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
100408318
NCBI-ProteinID:
XP_002756042
Ensembl:
ENSCJAG00000020619
UniProt:
A0A5K1TYA7
LinkDB
All DBs
Position
12:complement(22017132..22053126)
Genome browser
AA seq
1182 aa
AA seq
DB search
MEEPPGKPLSCEEKEKLKEKLAFLKREYSKTLARLQRAQRAEKIRHSIKKTVEEQDCLSQ
QELSPHLNHSEPKNKIPLYNKLHIKTHLDGETAEKTSITLDVGPESSNPGDGPGELPIQR
TDDTQEHFPHRVSDPDSEKKQKLPRRSKKQQKRTFISQERDCVFDADSLRLSGKSLKEQE
EISSKNPTRSPVTEIRTHFLSLQSELLDSPEPITETNGKSLLIPPTAQPEKGVDTLLRTN
LTKTTTVPLQTPSDSRSQHFESIPPKGSSELTTCGQKSIRFTSPVSLEAHGKKVTVSTEN
LVVNKGVSGHLPTSSNLEADISCSTNELTHNNLSANENQNLKEQNQTEKSLKSSSNALDG
RNENLQENDILSQPKSLSLEATSPLSAENHSCTMLEGLLFPAEYYVRTTRSMSNCQRKVA
VEAVIQSHLDVKKKGFKTKNKDASKNLNLSNEETDQSEIRMSDTCTGEPSSRNSQKFFSL
TKVNSPTAPTEDNDLSRKAVAQASGRRNRGKRKSACTPASDHCEPLLPTSSTSVINRAKD
EVTSHKYQKKKAVIRENGKKSRHQKEDSLSWSNSAYLSLDDDAFTAPFHKNRMLNLKQLS
SFLNMTDFQLPDEDFGPLKLEKLKSCSEKLMEPFESEVYGERHLKGRNCIFPEELSPKYM
DAEMEDLEEDIVVLPGKSHPKMPNPQSQCTKKGLSSSILLYTPLNTVVPDDNDRPTADMC
SPPFPILGTTPAFGSQGSYEKACTEVTGRTCCIPRLAHLKDSVCLASDGKQCDSSSSPAK
PHTTLQVSGRQGQPTCDCESVLQGTPPPTESFTFKENQLYGNTCQELHKRSVQQNEVAVL
PASGSINPGNLKLVSKLKNLSGSCSIDVSAMFWERAGCKEPCIITACEDVVSLWKALGAW
QWEKLYTWHFTEVPVLQIVSVPDVYNLVCVALGNLEIREIRALLCSSDDESEKQVLLKSG
NIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGSKENQFLMPPAETILTFAEVQGMQE
ALLGTTVMNNIVIWNLKTGQLLRKMHIDDSYQASVCHKAYSETGLLFIVLSHPCTKESEF
LESPVFQLIAINPKTTLNVGVMLYCLPQGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLL
GHCTALLPPISDQNWSFVKWSGTHSHLLAGQKDGNIFIYHYS
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atggaagagcctcccgggaagcccctcagctgtgaggagaaggaaaagttaaaggagaaa
ttagcattcttgaaaagagaatacagcaagacactagcccgccttcagcgtgcccaaagg
gctgaaaaaataaggcattctattaagaaaacggtagaagagcaagattgcttgtcccag
caggaactctcaccacacctaaaccattcagaacctaaaaataaaatacctctttataac
aagttacacatcaaaacccatcttgatggagaaactgcagaaaagacatctatcacactt
gatgttgggcctgagtcttctaaccctggagatggcccaggagaattacctatacaaaga
acagatgacacccaagaacatttcccacacagggtcagtgaccctgatagtgagaaaaaa
cagaaactgccaaggagaagtaagaagcagcagaagagaacatttatttcacaggagaga
gactgtgtctttgacgctgattcactcagactgtctgggaaaagcctaaaggaacaggaa
gaaatcagcagcaaaaatcctactagatcaccagtaactgaaataagaactcacttttta
agtcttcagtctgaacttctggattctccagaaccaattacagaaactaatggaaagagt
ttattaattccaccaactgcccaaccagaaaaaggtgttgatacactcctaagaactaat
ttgaccaagacgactacagttcctttacagactccatcagatagtaggagtcagcacttt
gaaagtattcctcctaaaggtagcagtgaacttactacttgtggccaaaaaagcattaga
tttacttcaccggtaagtttggaggcacatggcaaaaaagtaactgtctctacagagaac
ctggttgtaaataaaggtgtaagtggccatctgcccacaagttctaatttagaggcagat
atttcatgttctacaaatgaactcactcacaataacttatcagcaaatgaaaaccaaaac
ttaaaagaacaaaatcaaacagagaaatctttaaaatcttccagcaatgctcttgatggc
agaaatgaaaatcttcaggaaaatgatattctaagtcaacctaagagtcttagcctagaa
gcaacttctcctctttctgcagaaaatcattcttgcacaatgcttgaaggtcttctgttt
cctgcagaatattatgttagaacaacacgaagcatgtccaattgccagaggaaagtagcc
gtggaggctgtcattcagagtcatttggatgtcaaaaagaaagggtttaaaactaaaaat
aaggatgcaagtaaaaatttaaacctttccaatgaggaaactgaccaaagtgaaattagg
atgtctgacacatgcacaggagaaccgagttcaagaaactctcagaaatttttctcgtta
actaaagtcaactctcccactgcgcctactgaagacaatgacctgtctaggaaggcagtt
gcccaggcatctggtagaagaaacagaggaaaaagaaaatcagcctgcaccccagcatca
gatcattgtgaaccacttttgccaacttccagcacgtcagttattaatagggccaaagat
gaagtcacctcgcacaaatatcagaagaaaaaggcagttattcgagagaacgggaagaaa
agtcgtcatcaaaaagaggactccctttcttggagtaatagtgcttatttatccttggat
gatgatgctttcacagctccattccataagaatagaatgctgaatttaaagcagctatcg
tcttttctcaatatgacagactttcagttgcctgatgaagactttgggcctcttaagctt
gaaaaactgaaatcctgctcagaaaaactaatggagccctttgaatcagaagtgtatgga
gagaggcatcttaaagggagaaattgtattttcccagaggaactgagtcctaaatacatg
gatgcagaaatggaagacttagaagaggacattgttgttctaccaggaaaatcgcatccc
aagatgccaaacccacaaagccagtgtacaaagaagggcctttcttcatccatattactt
tatactcctttaaatacggttgtgcctgatgataatgatagacctactgcagacatgtgt
tcacctcctttccccatcttaggtactactccagcctttggctctcaaggctcctatgaa
aaagcatgcacagaggtcactggacgaacttgctgtataccccgacttgctcatttgaaa
gactcagtctgtcttgccagtgatggtaaacagtgcgacagttcaagcagcccagcaaaa
ccacataccaccctgcaagtgtcaggcaggcaaggacaacctacctgtgactgtgagtct
gtcttgcaaggaacacccccacccactgagtcattcacttttaaagaaaatcagctctat
ggaaacacatgccaggagttgcataaacggtctgtccaacagaatgaagtagcagtgctt
cctgcttctggtagcataaacccaggcaacctaaaattggtttcaaagttaaagaatctt
tcaggttcctgttccatagatgtgagtgccatgttttgggaaagagccggttgtaaagag
ccatgtatcataactgcttgtgaagatgtagtttctctttggaaagctttgggtgcttgg
cagtgggaaaaactttatacctggcacttcacagaggttccagtattacagatagtttca
gtgcctgatgtgtataatctggtatgtgtggctttgggaaatttggaaatcagggagatc
agggcattgctttgttcctctgatgatgaaagtgaaaagcaagtattactgaagtctgga
aatataaaagctgtgcttggcctgacaaagaggaggctagttagtagcagtgggaccctt
tctgatcaacaagttgaagttatgacatttgcagaagatggaggaagcaaagaaaaccaa
tttttgatgccccctgcggagactattctaacttttgctgaggtccaagggatgcaagaa
gctctgcttggtactactgttatgaacaacattgttatttggaatttaaaaactggtcaa
ctcctgagaaagatgcacattgatgattcttaccaagcttcagtctgtcacaaagcctat
tctgaaacagggcttctgtttattgtcctgagtcatccctgtaccaaagagagtgagttt
ttggaaagccctgtgtttcaactgattgcgattaaccctaagacgaccctgaatgtgggt
gtgatgttgtactgtcttcctcaagggcaggctggcaggttcctggaaggtgacgtgaaa
gatcattgtgcagcggcaatcttgacttctggaacaattgccatttgggatttacttctc
ggtcactgcactgccctcctcccacctatctctgaccaaaactggtcttttgtgaaatgg
tcaggtacacactctcatttgttggctggacaaaaagatggaaatatattcatatatcac
tactcataa
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integrated database retrieval system
