Callithrix jacchus (white-tufted-ear marmoset): 100408489
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Entry
100408489 CDS
T03264
Name
(RefSeq) collagen alpha-4(VI) chain
KO
K06238
collagen type VI alpha
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04151
PI3K-Akt signaling pathway
cjc04510
Focal adhesion
cjc04512
ECM-receptor interaction
cjc04820
Cytoskeleton in muscle cells
cjc04974
Protein digestion and absorption
cjc05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100408489
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100408489
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100408489
09142 Cell motility
04820 Cytoskeleton in muscle cells
100408489
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100408489
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
100408489
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cjc04147
]
100408489
00536 Glycosaminoglycan binding proteins [BR:
cjc00536
]
100408489
Exosome [BR:
cjc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100408489
Glycosaminoglycan binding proteins [BR:
cjc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100408489
Hyaluronan
Extracellular matrix or blood plasma proteins
100408489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
Kunitz_BPTI
vWA_SIBA-E
VWA_CoxE
Microp_apicomplexa_19
Motif
Other DBs
NCBI-GeneID:
100408489
NCBI-ProteinID:
XP_002759734
UniProt:
A0A5F4W409
LinkDB
All DBs
Position
17:complement(46944998..47114563)
Genome browser
AA seq
2348 aa
AA seq
DB search
MEVWKTFWGIILLEASFGIIKSQRIVCREASLGDVVFLVDTSINSQHTRSVRNFLYILVN
SFNVSSKTIRVGLAQYSDVPHSEFLLSTYHRKNDVLRHIRQFQFKPGGKKMGLALQFILD
HHFQEAAGSRASQGVPQIAVVMSSGPAEDHVHGPGEALRRAGILVYAVGVKDAVWAELRE
IASSPQENFTSFVPSLSGLSSLAQKLRQELCDTLAKAASRVDHISPACREGAVADVVFLV
DSSTSIGPQNFQKVKNFLYSVVSGLDVSSDRVRVGLAQYNDDIYPAFQLNQHPLKSMVLE
QIQNLPYRTGGTNTGNALEFIRTSYLTEGSGSRAKDRVPQIVILVTDGESNDEVQEAADQ
LKEDGIVVYVVGINVQDVQELQKIASEPFEKFLFNIENFNILQDFSGSILQTLCSAVEGK
IKEFIKAYADVVLLADTSQDTSRTSFQWMQNFLSRVVGMLEVGRDKYQIGLAQYGDQSHI
EFLLNTYKTQNEMIAHIHERFVPLGGSRRTGKALQYLLQTFFQEEAGSRFLQGIPQYAVV
ITSGKSKDEVQDAAQRLREKGVKVMSVGVQDFDRRELEWMGSPDLVYDIQREDRVRHVVE
DMNVVIQGTGQREHRNTANKEAVGACATAIPADLVFLTEEFSRVRQPNFQQVISFLKTIV
SLLSIRPDAVRFGLVFYSEEPRLEFSLDTFQNPAEILEHLDKLTYRERRGRTKTGAALDF
LRNEVFIQEKGSRSSHGVQQIAVVITENFSQDSVSGPASRLRRAGVTIYAVGTQDVSESK
DLEKMASYPPWKHSVPLESFLQLSIIGSKLTNQLCPEIVDSQVSVRGTSYPVQEGCVHIQ
KADIYFLIDGSGSIYPEAFLDMKVFMNEVIKMFQIGPDRVQFGVIQYSDEIKSKFVLSQY
PTVAELKVAIDNIQQGGGGTTTGEALNNMTQVFADTARINVARYLIVITDGKSSDPVADA
AEGLRASGVIIYAIGVREANIDELKEIAKDKIFFVYEFDLLKDIQKEVVRDICSSEACKN
SKADIVFLIDGSESISPEDFERMKRFVESMVNQSNIGTDSIQIGLLQFSSIPKEEFRLNR
YSSKVDIYNAIFAVQQMRDGTRTGKALNFTLPFFESSKGGRPSVQQYLIVITDGVAQDNV
ILPAKALRDKNIIIFAIGVGEAKKSQLLEITNDEDRVYYDVDFEVLQNLEKEILSKVCDP
QGCDLDLSVGIDISTPSKQVQQKLQGLLPELMQQLSLLSNISCGISDQINPRFRYLVPGP
NGQLIFDSGFEKYSYEIIQKFLVHQAAKNSYMDVNFLQSLGDNAIHLSSAKVKVLLVFTD
GLDDDLKRLKKTSEFLHSRGFSGLLVIGLEGVHKLEELQELEFGRGFAYKQPLSITLQSL
PSILLKQLDTIVERICCDIYAKCFGEDGYGGDYGSPGRKGEKGFDGVPGHPGEEGRSGER
GLQGLPGLRGEEGCPGMRGPKGARGFSGEKGNPGEGGADGLDGEQGDRGIPGSPGEKGNR
GNQGLPGPPGQPGELGEPGLRGDPGDPGTNSYIQGPKGEKGRRGHQGRSSFVGVQGETGN
VGPQGTRGRRGPAGLKGVPGESGEQGYQGELGYSGAQGPRGRQGPPGTSGQKGLVGAQGN
PGTPGPPGSKGKDGLRGIKGELGDAGERGPRGQQGPRGQPGLPGSDGFGHPGRKGKKGEP
GFPGYPGAQGEDGDPGRPGEKGVKGVRGKRGNAGFPGFVGTPGDRGPPGQMGIKGPKGLV
DMTPCKIVDFTRENCPCSRGITRCPAFPTEVAFALDMSSDVSPLDFERMRDILLSLLMKM
EISDSNCPTGARVAIVSYNTKTDYLVRFSDHKGKAALLEAVRNIPLEQSSGRRNLGAAMR
FMARHVFKRVRSGLLMRKVAVFFQTGWAYDTASINTATLELAAVDINPAVITFTERHNLP
DSLLMDGTNRFYLFIWKTEHQQDVEHVARCVLCYDKCRPDPECPAGVPGPQEVDVDLAFV
VDSSYGVDADMYHWSLSLVDTVLEDLEVAEQPGTSHHGARVALVMHTTPNFWPGVGHLPV
LEGFHLTTYGHRTQMQKHVREAAGRPLQGTPALGHALEWTLENVLLAAPLPRRARVLFAI
VASETSSWDREKLWTLSLEAKCKGITLFVLALGPGVRTEELAELASVVSAPSEQHLLRLQ
GVSEPEVTYAQRFTRAFLSLLKSGMNQYPPPELTEECGGLHRGDTLLQLVTPANRLPRHP
FGMSGLADDLEALEVTDIFLEEKREDTITSVTQQEALENYENNKHDIGGNEQETPAKPTE
ARKESNAGITCDPCSMDPAQGECRDYTLKWYYSKERRVCQQFWYGSCGGNANRFETKEEC
EAQCVPTQ
NT seq
7047 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgtggaagacattttgggggatcatcctccttgaagccagttttggcatcatc
aagtcacagaggatcgtctgcagggaggcctctctgggagatgttgtgtttctggtggac
acgagcatcaactcccaacatacacgcagtgtgcggaacttcttgtatattctggtaaac
agcttcaatgtcagcagcaagaccatccgtgtgggtctggcccagtacagcgatgtgccc
cattcagagttcttgctttccacctaccaccgcaagaatgatgtattgagacacattcgg
caatttcaatttaagcctgggggcaagaagatgggcctggccctgcagttcattctagat
catcacttccaggaagcagcagggagccgggcaagccaaggggtacctcagatcgccgtg
gtgatgagcagtgggccagctgaggaccacgtccacggacccggggaggcattgaggcgg
gcaggcatcctggtttatgctgttggtgtcaaagatgcagtttgggcagagctcagggaa
attgccagtagcccccaggagaactttacctcctttgttcccagcctctctggtctgagc
agtctcgcccagaagctgcggcaggagctctgcgataccttggcaaaggcagcttcacgt
gttgaccacatctctccagcttgcagagaaggagctgtggcagacgttgtgtttctagta
gacagttcaactagcattggaccccagaacttccaaaaagtcaagaactttctttactcc
gttgtctcggggcttgacgtcagcagtgaccgtgtccgagtgggacttgcccagtataat
gacgacatctacccagccttccagctgaaccagcaccctctgaagagcatggtcttggag
cagatccagaatctgccataccgcacaggaggcacaaacacagggaatgccctggagttt
atcaggaccagctatttgactgaggggtctggcagtcgggctaaggacagagttcctcag
atagttatcctggtgacagatggggagtcaaacgatgaggtccaggaggcggctgaccag
ttgaaagaagatggaattgttgtgtatgtggtagggatcaatgtccaggatgtccaagag
ttgcaaaaaatagccagtgagccatttgagaagtttctcttcaacatcgaaaacttcaac
atcctgcaggatttttcaggaagtattcttcagactctctgctcagcagtggagggtaag
ataaaagaattcatcaaagcttatgcagacgtggtccttcttgctgacacctcacaggac
acatcacggaccagtttccagtggatgcagaatttcctctccagagtggttggcatgttg
gaggttggcagggacaagtatcagattgggctggctcagtatggtgatcaaagtcacatt
gagtttttgctcaatacctacaaaacccagaatgagatgatagctcatattcatgagcgt
tttgtgcccctgggtggctccaggaggacaggcaaggcactgcaataccttcttcagacc
ttcttccaggaggaagcaggaagccggtttctccagggcattccccagtatgcagtggtc
attacctcaggcaaatctaaggatgaagtccaggatgctgcacagagactaagggagaaa
ggcgtgaaagttatgtctgttggtgtgcaggactttgacaggagagaactggaatggatg
gggtccccagaccttgtgtatgatatacagagagaagatagagtcagacacgtggtggaa
gatatgaatgtggtgatccaagggactggacagcgagagcacaggaatacagccaacaag
gaggctgtaggagcatgtgcaactgctatcccggctgacttagtattcctcactgaggag
tttagcagggttaggcaacccaatttccaacaagttatcagtttcctaaagaccattgtc
agtttgctaagcattcgtcctgatgccgtgagatttggcttggtcttctacagcgaggaa
ccacgacttgagttttcactggatacatttcagaatccagctgaaatcttggagcatttg
gacaaattaacctaccgtgaaagaagaggaaggacaaagactggtgctgcattagatttc
ctgaggaatgaggttttcattcaggagaagggtagccggtccagccacggtgtgcagcag
atagctgtggtcatcacggaaaacttctcccaagacagtgtatctggacctgcttctcgc
ctccgaagagcaggggtcaccatctatgcagtgggcacccaggatgtctcagagagtaag
gacctggagaagatggcatcatatcctccttggaagcattcagtccccctggaatccttt
ttgcagctctccataataggaagcaagcttacaaaccagctctgccctgagattgtggac
agtcaagtttctgttagaggaacgagctatcctgtacaggaaggttgtgtgcacatccaa
aaggcagatatttacttccttattgatgggtctggcagcatctatccagaagcttttctt
gacatgaaggtgttcatgaatgaagtgataaagatgttccagattgggcccgacagagta
cagtttggagtcattcagtactcagatgaaattaaaagtaaatttgtcctcagccagtat
cccactgtggcagagctgaaggtagccattgacaacatccagcaaggcggaggtggtacc
acaactggtgaggccttgaacaacatgactcaagtgtttgcagacactgcccgaatcaat
gtcgctcgatatcttatagtcatcactgacggtaaatcttcagacccggtggctgacgct
gcagaaggattgcgggcaagtggagttatcatttatgccattggagtaagagaagctaac
attgatgagcttaaggaaatagctaaagacaagattttttttgtgtatgagtttgattta
ctgaaggacatacaaaaagaagtggtacgggacatctgctcctcagaggcctgtaagaat
agtaaagctgacattgtcttcctgatagatggttcagaatctatctccccagaagacttt
gaaaggatgaaaagatttgtggagagcatggtgaaccaatctaatattggtactgatagc
atccaaattggccttttgcagttcagctcaattccaaaggaagaattcaggctcaaccga
tactcctcaaaggtggacatttacaatgccatctttgctgttcagcagatgcgtgatggc
acccgcactgggaaagctctgaatttcactctgcctttttttgaaagttcaaaaggaggg
agacccagtgttcaacaatatctgattgtgatcaccgatggggttgcccaggataatgta
atcctaccagccaaagccctcagggacaaaaacataattatttttgccatcggggtggga
gaagccaaaaaatcgcagcttttggagatcactaatgatgaggacagagtgtactatgat
gtagattttgaggtcctgcagaacctggagaaggaaattctttctaaggtctgtgatcca
caaggatgcgacctggatttgtctgtaggaatcgatatctcaactccttcaaagcaagtt
cagcagaagcttcaaggtttactgccagagctgatgcaacagttgtctttgctttccaac
atcagctgtggcatttccgatcagatcaacccaagattccgctacttggttcctggccca
aatggccagcttatctttgactctggctttgaaaaatacagttatgagatcatccagaag
ttcttggttcatcaggctgccaagaatagctatatggatgtgaactttttgcagtctttg
ggagataatgctattcatctctcttctgctaaagtgaaggtccttttagtatttacggat
ggactggatgatgatttaaagaggctgaagaaaacatcggagtttctccacagcagagga
ttctctggactcctagtcattggcctggaaggtgtccataaattagaagagctccaggag
ctggaatttggcagagggtttgcatataagcaacctctgagcatcacactgcaatccctc
ccaagcatcttactgaagcaacttgatacaattgtggaaagaatatgctgtgatatatat
gcaaagtgttttggagaagatgggtacggaggtgattatgggagtcctgggaggaaggga
gagaagggttttgatggggtacctggtcatcccggtgaagaaggcagatctggagaacga
ggcctccagggtcttcctggactccgaggtgaggaaggatgccccggtatgaggggacct
aagggagcaagaggattttcaggagagaagggcaaccctggtgagggaggagctgatggc
ttggatggagaacagggtgatcgtggaatcccagggtcacctggagaaaaaggaaatagg
ggaaatcagggcctaccgggaccgccaggacaacctggagagcttggagagcctgggtta
aggggagatcctggggatcctggaactaatagctatatccaaggccctaagggagaaaaa
ggaaggcgtgggcatcagggacgttctagttttgttggagttcagggagaaactggaaat
gttggccctcagggaacaagaggaaggcggggtccagcagggttaaagggtgtgcctgga
gaatccggcgaacagggttaccaaggagagcttgggtattcaggcgcacaggggccaaga
ggaaggcaaggaccaccaggaacttctggacaaaaaggcttagtgggtgctcaggggaat
cctggcactccagggcctccaggttcaaaaggaaaggatggactaagaggaataaaggga
gagcttggtgatgcaggagaaagaggcccaaggggtcaacaaggaccgagagggcaacct
ggtcttcctggttctgatggatttggacatccagggagaaaaggaaaaaagggtgaacct
ggattccctggctatcctggtgcacaaggagaagatggtgacccgggccgtccaggagag
aagggggtgaagggagtaagagggaagaggggtaatgctggctttcctggatttgttgga
actccaggtgacagaggcccaccaggacaaatgggcatcaagggccccaaaggtttggta
gatatgacgccttgcaaaattgttgatttcacacgcgaaaactgcccttgttcaagaggt
attaccagatgcccagcattcccaaccgaagtggcctttgccttagacatgtcaagtgat
gtctccccattggattttgagaggatgagagacattttattatctttgctgatgaagatg
gaaataagtgacagtaactgcccaacaggtgcccgtgtggccattgtttcctacaatacc
aaaaccgattacctagttcgtttctcagaccacaaggggaaggctgcactcctggaggct
gtcaggaacatccccctggagcagtcgtctggccgcaggaacctcggggccgccatgaga
tttatggcaagacacgtgttcaaacgtgtacgctcgggtcttctcatgaggaaggtggct
gtgttcttccagaccggctgggcctatgatacagcttccatcaacacggccacactggag
cttgctgcagtggatatcaaccccgcggtcatcaccttcacagagcggcacaacctccca
gatagcctgctgatggatggaaccaacagattttacttgttcatctggaagacagagcac
cagcaggatgtggagcatgtggcccgctgtgttctctgctacgacaaatgcagacccgac
ccagaatgcccggctggcgtgccagggccccaggaggtggatgtggacttggcgtttgtg
gtggacagctcctatggcgtggatgccgacatgtaccactggtctttgagtctagtggac
actgtgctagaagacctggaggtggctgagcagccaggcacatcccaccatggggcacgc
gtggccctggtgatgcacacgacacccaacttctggccgggtgtgggtcacctccctgtg
ctcgagggcttccacctgaccacgtatggccaccggacgcagatgcagaaacatgtccgt
gaggctgcaggccgccccttacagggaactcccgccctaggccacgccctggagtggaca
ctggagaatgtactcctggcagcccctctgccacggagggcacgagtcctctttgccatc
gtggccagcgagacaagtagctgggacagggagaagctatggactttgtccctggaggcc
aaatgcaagggcatcaccctctttgtgctggccttgggtccaggtgtgcggactgaagag
ctagccgagctggcctccgtggtcagtgccccctccgagcagcatctactgcgcctacaa
ggagtttcagagccagaggtcacctacgctcagagattcactcgggccttcctgagcctc
ctaaaaagtggaatgaaccagtacccacccccagagctcactgaagaatgtgggggtctg
caccgtggggacactctgctgcaattagttacacctgccaacaggttgcccaggcaccca
tttggcatgtctggcttggctgatgatttggaagcacttgaagtaacagacatttttcta
gaagagaagagagaagacacgataacatctgtaactcagcaagaagcacttgaaaactat
gaaaacaacaaacatgacattggaggcaatgaacaagaaacaccagcaaaaccaacagaa
gctagaaaagaaagcaatgcaggcattacctgtgatccttgttccatggatccagcgcaa
ggtgagtgccgggattacaccctgaagtggtattacagcaaggagaggcgggtttgccag
cagttctggtatggcagctgtgggggcaatgccaaccggtttgaaaccaaagaagaatgt
gaggctcagtgtgtcccgacgcagtaa
DBGET
integrated database retrieval system
