Callithrix jacchus (white-tufted-ear marmoset): 100410598
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Entry
100410598 CDS
T03264
Symbol
ATXN2
Name
(RefSeq) ataxin-2 isoform X21
KO
K23625
ataxin 2/2L
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc05014
Amyotrophic lateral sclerosis
cjc05017
Spinocerebellar ataxia
cjc05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
100410598 (ATXN2)
05017 Spinocerebellar ataxia
100410598 (ATXN2)
05022 Pathways of neurodegeneration - multiple diseases
100410598 (ATXN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjc03019
]
100410598 (ATXN2)
Messenger RNA biogenesis [BR:
cjc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100410598 (ATXN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SM-ATX
LsmAD
PAM2
LSM
Motif
Other DBs
NCBI-GeneID:
100410598
NCBI-ProteinID:
XP_002753063
Ensembl:
ENSCJAG00000011756
UniProt:
F6SS84
LinkDB
All DBs
Position
9:complement(110823322..110965393)
Genome browser
AA seq
1305 aa
AA seq
DB search
MRSAAAPPQSSAAATEPRRFAAARWPGGRSLPRPARRSGRGGGGEVPGPYPSAAPPPPGP
GPPPSPQRSPLSASDCFGSNGNGGASRSGFRRFLGLGGPPRPFFVLLFPLVSPGAPPAAP
TRASPLGTLASPLRSGDSSARPAPDCPRPACEPVYGPLTMSLKPQQQQQQQQQQQQQQPQ
PPAAANVRKPGGSGLLASPAVVPSPSSSSVSSSSATAPSSSAAVATAGSGRPGLGRGRNS
NKGLPQSTISFDGIYANMRMVHILTSVVGSKCEVQVKNGGIYEGVFKTYSPKCDLVLDAA
HEKSTESSSGPKREEIMESILFKCSDFVVVQFKDMDSSYAKRDAFTDSAISAKVNGEHKE
KDLEPWDAGELTANEELEALENDVSNGWDPNDMFRYNEENYGVVSTYDSSLSSYTVPLER
DNSEEFLKREARANQLAEEIESSAQYKARVALENDDRSEEEKYTAVQRNSSEREGHSINT
RENKYIPPGQRNRDVISWGSGRQNSPRMGQPGSGSMPSRSTSHTSDFNPNSGSDQRVVNG
GVPWPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPSHPSAHGSPAPV
STMPKRMSSEGPPRMSPKAQRHPRNHRVSAGRGSISSGLEFVSHNPPSEAATPPVARTSP
SGGTWSSVVSGVPRLSPKTHRPRSPRQNSIGNTPSGPVLASPQAGIIPTEAVAMPIPAAS
PTPASPASNRAVTPSGEAKDSRLQDQRQNSPAGNKENIKPNETSPSFSKAENKGISPIVS
EHRKQIDDLKKFKNDFRLQPSSTSESMDQLLNKNREGEKPRDLIKDKIEPNAKDSFSENS
SSNCTSGSSKPNSPSISPSILSNTEHKRGPEVTSQGVQTSSPACKQEKDDKEEKKDAAEQ
VRKSTLNPNAKEFNPRSFSQPKPSTTPTSPRPQAQPSPSMVGHQQPTPVYTQPVCFAPNM
MYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAVPNMPQQRQDQHHQSAMMHPASAAGPPIA
ATPPAYSTQYVAYSPQQFPNQPLVQHVPHYQSQHPHVYSPVIQGNARMMAPPTHAQPGLV
SSSATQYGAHEQTHAMYACPKLPYNKETSPSFYFAISTGSLAQQYAHPNATLHPHTPHPQ
PSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPA
SNTQSPQNSFPAAQQTVFTIHPSHVQPAYTNPPHMAHVPQAHVQSGMVPSHPTAHAPMML
MTTQPPGGPQAALAQSALQPIPVSTTAHFPYMTHPSVQAHHQQQL
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcagcggccgcacctcctcagagttccgcggcagccaccgagcctcgccgtttc
gccgcagctaggtggcccggggggcgctcgctcccgcggccggcacggcgaagcgggcgg
ggcggcggtggcgaggtaccgggcccgtatccctccgccgcccctcccccgcccggccct
ggcccccctccctccccgcagcgctcgcctctctccgcctcagactgttttggtagcaac
ggcaacggcggcgcatcccggtccggcttccggcggttcctcggtctcggcgggcctccc
cgccccttcttcgtcctccttttccccctcgtcagcccgggcgcccccccggccgcgcca
acccgcgcctccccgctcggcactctcgcgtccccgctgcgctccggcgactcctcggcg
cgcccggctcccgactgtccccgcccggcgtgcgagccggtgtatgggcccctcaccatg
tcgctgaagccccagcagcagcagcaacagcagcagcagcagcagcagcagcagccgcag
ccgcctgcggccgccaatgtccgcaagcccggcggcagcggccttctcgcgtcgcccgcc
gtcgtgccttcgccgtcctcgtcctctgtctcctcgtcctcggccacggctccctcttcc
tcggcggccgtggcgaccgctggcagcgggaggcccggcctgggcagaggtcgaaacagt
aacaaaggattgcctcagtctacgatttcttttgatggaatctatgcaaatatgaggatg
gttcatatacttacatcagttgttggctccaaatgtgaagtacaagtgaaaaatggaggt
atatatgaaggagttttcaaaacatacagtcctaagtgtgatttggtacttgatgctgca
catgagaaaagtacagaatccagttcggggccaaaacgtgaagaaataatggagagtatt
ttgttcaaatgttcagactttgttgtggtacaatttaaagatatggactccagttatgca
aaaagagatgcttttactgactctgctatcagtgctaaagtgaatggcgaacacaaagag
aaggacctggaaccctgggatgcaggtgaactcacagccaatgaggaacttgaggctttg
gaaaatgatgtatctaatggatgggatcccaatgatatgtttcgatataatgaagaaaat
tatggtgtagtatctacatatgatagcagtttatcttcgtatacggtgcccttagaaaga
gataactcagaagaatttttaaaacgggaagcaagggcaaaccagttagccgaagaaatt
gagtcaagtgcccagtacaaagctcgagtggccctggaaaatgatgataggagtgaggaa
gaaaaatatacagcagttcagagaaattccagtgaacgtgaggggcacagcataaacact
agggaaaataaatatattcctcctggacaaagaaatagagatgtcatatcctggggaagt
gggagacagaattcaccgcgtatgggccagcctggatccggctccatgccatcaagatcc
acttcacacacttcagatttcaacccgaattctggttcagaccaaagagtagttaatgga
ggtgttccctggccatcgccttgcccatctccttcctctcgcccaccttctcgctaccag
tcaggtcccaactctcttccacctcgggcagccacccctacacggccgccctccaggccc
ccctcgcggccatccagacccccgtctcacccctctgctcatggttctccagctcctgtc
tctactatgcctaaacgcatgtcttcagaagggcctccaaggatgtccccaaaggcccag
cgacatcctcgaaatcacagagtttctgctgggaggggttccatatccagtggcctagaa
tttgtatcccacaacccacccagtgaagcagctactcctccagtagcaaggaccagtccc
tcggggggaacgtggtcatcagtggtcagtggggttccaagattatcccctaaaactcac
agacccaggtctcctagacagaacagtattggaaatactcccagtgggccagttcttgct
tctccccaagctggtattattccaactgaagctgttgccatgcctattccagctgcatct
cctacgcctgctagtcctgcatcaaacagagctgttaccccttctggtgaggctaaagat
tccaggcttcaagatcagaggcagaactctcctgcggggaataaagaaaatattaagccc
aatgaaacatcacctagcttctcaaaagctgaaaataaaggtatatcaccaattgtttct
gaacatagaaaacagattgatgatttaaagaaatttaaaaatgattttaggttacagcca
agttctacttctgaatctatggatcaactactaaacaaaaatagagagggagaaaaacca
agagatttgatcaaagacaaaattgaaccaaatgctaaggattctttcagtgaaaatagc
agcagcaactgtaccagtggcagcagcaagccgaatagccccagcatttccccttcaata
cttagtaacacggagcacaagaggggacctgaggtcacttcccaaggggttcagacttcc
agtccagcatgtaaacaagagaaagatgataaggaagagaagaaagatgcagctgagcaa
gttcggaaatcaacattgaatcccaatgcaaaagagttcaacccacgttccttctctcag
ccaaagccttctactaccccaacttcacctcggcctcaagcacaacctagcccatctatg
gtgggtcatcaacagccaactccagtttatactcagcctgtttgttttgcaccaaatatg
atgtatccagtcccagtgagcccaggcgtgcaacctttatacccaatacccatgacgccc
atgccagtgaatcaagccaagacatatagagcagtaccaaatatgccccaacagcggcaa
gaccagcatcatcagagtgccatgatgcacccagcatcagcagcaggcccaccgattgca
gccaccccaccagcttactccacacaatatgttgcctacagtcctcagcagttcccaaat
cagccccttgttcagcatgtgccacattatcagtctcagcatcctcatgtctatagtcct
gtaatacagggtaatgctagaatgatggcaccaccaacacatgcccagcctggtttagta
tcttcttcagcaactcagtacggggctcatgagcagacgcatgcgatgtatgcatgtccc
aaattaccatacaacaaggagacaagcccttctttctactttgccatttccacgggctcc
cttgctcagcagtatgcgcaccctaacgctaccctgcacccacatactccacaccctcag
ccttcagctacccccactggacagcagcaaagccaacatggtggaagtcatcctgcaccc
agtcctgttcagcaccatcagcaccaggccgcccaggctctccatctggccagtccacag
cagcagtcagccatttaccacgcggggcttgcaccaaccccaccctccatgacacctgcc
tccaacacacagtcgccacagaatagtttcccagcagcacagcagaccgtctttacgatc
catccttctcatgttcaaccggcgtataccaatccaccccacatggcccacgtacctcag
gctcatgtacagtcaggaatggttccttctcatccaactgcccatgcgccaatgatgcta
atgacgacacagccacccggcggtccccaggccgccctcgctcaaagtgcactacagccc
attccagtctcgacaacagcgcatttcccctatatgacgcacccttcagtacaagcccac
caccaacagcagttgtaa
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