| Entry |
|
|---|
| Symbol |
SMARCD2
|
|---|
| Name |
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2
|
|---|
| KO |
| K11650 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D |
|
|---|
| Organism |
cjc Callithrix jacchus (white-tufted-ear marmoset)
|
|---|
| Pathway |
| cjc03082 | ATP-dependent chromatin remodeling |
|
|---|
| Brite |
KEGG Orthology (KO) [BR:cjc00001]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100410689 (SMARCD2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
100410689 (SMARCD2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
100410689 (SMARCD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:cjc03021]
100410689 (SMARCD2)
03036 Chromosome and associated proteins [BR:cjc03036]
100410689 (SMARCD2)
Transcription machinery [BR:cjc03021]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
100410689 (SMARCD2)
Chromosome and associated proteins [BR:cjc03036]
Eukaryotic type
Chromatin remodeling factors
BAF complex
100410689 (SMARCD2)
PBAF complex
100410689 (SMARCD2)
GBAF(ncBAF) complex
100410689 (SMARCD2)
|
|---|
| SSDB |
|
|---|
| Motif |
|
|---|
| Other DBs |
|
|---|
| LinkDB |
|
|---|
| Position |
5:complement(85118159..85130859)
|
|---|
| AA seq |
531 aa
MSGRGAGGFPLPPLSPGGGAVAAALGAPPPSAGPGMLPGPVLRGPGPAGGVGGPGAAAFR
PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLL
VPQVQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEI
QEAIKKPLTQKRKLRIYISNTFSPSKAEGDSVGTAGTPGGTPAGDKVASWELRVEGKLLD
DPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTL
LLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFR
QIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQM
SNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLK
IITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT |
|---|
| NT seq |
1596 nt +upstreamnt +downstreamnt
atgtcgggccgaggcgcgggcgggttcccgctgcccccgctgagccctggcggcggcgcg
gtggccgcggccctgggagcgccgccgccttctgcgggacccggcatgctgcccggaccg
gtgcttcggggaccagggccagctggaggcgtggggggccccggggccgccgccttccgc
cccatgggccccgcgggccccgcggcgcagtaccagcgacctggcatgtcaccagggaac
cggatgcccatggctgggttgcaggtgggaccccctgctggctccccatttggtgctgca
gctccacttcgacctggcatgccacctaccatgatggatccattccgaaaacgcctgctt
gtgccccaggtgcagccccccatgcctgcccagcgccgggggttaaagaggaggaagatg
gcagataaggttctacctcaacgaatccgggagcttgtcccagagtctcaggcctacatg
gatctcttggcttttgagcggaagctggaccagaccattgctcgcaaacgaatggagatc
caggaggccatcaaaaagcctctgacgcaaaagcgaaagcttcggatctacatttccaac
acattcagtcccagcaaggcagaaggcgacagtgtaggaactgcagggacccctggggga
accccagcaggggacaaggtggcttcctgggaactccgagtggaaggaaaactgctggat
gatcctagcaaacagaagaggaagttttcttcattctttaagagcctggtcattgagctg
gacaaggagctgtatgggcctgacaatcacctggtggagtggcaccggatgcccaccacc
caggagacagatggcttccaggtaaaacggcctggagacctcaatgtcaagtgcaccctc
ctgctcatgctggatcatcagcctccccaatacaaattggacccccgattggcgagactg
ctgggagtgcacacacagacgagggctgccatcatgcaggccctgtggctttacatcaag
cataaccagctgcaggacgggcatgagcgggagtacatcaactgcaaccgctatttccgc
cagatcttcagttgtggccgactccgtttctctgagattcccatgaagctggcggggttg
ctgcagcacccggaccccattgtcatcaatcatgtcattagtgtggacccaaacgaccag
aagaagacagcctgttacgacattgatgtggaggtggatgacccgctgaaggcccagatg
agcaattttctggcctctaccaccaatcagcaggagattgcctcccttgatgtcaagatc
catgagaccattgagtccatcaaccagctaaagacccagagggatttcatgctcagcttt
agcaccgacccccaggacttcattcaggaatggctccgttcccagcgccgagacctcaag
atcatcactgatgtgattggaaatcctgaggaggagagacgagctgctttctaccaccag
ccctgggcccaggaagcagtaggcaggcacatctttgccaaggtgcagcagcgaaggcag
gaactggaacaggtgctaggaattcgcctgacctaa |
|---|
