Callithrix jacchus (white-tufted-ear marmoset): 100410753
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Entry
100410753 CDS
T03264
Symbol
COL27A1
Name
(RefSeq) collagen alpha-1(XXVII) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04820
Cytoskeleton in muscle cells
cjc04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100410753 (COL27A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100410753 (COL27A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cjc00536
]
100410753 (COL27A1)
Glycosaminoglycan binding proteins [BR:
cjc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100410753 (COL27A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
100410753
NCBI-ProteinID:
XP_035111370
Ensembl:
ENSCJAG00000018027
LinkDB
All DBs
Position
1:159486703..159643459
Genome browser
AA seq
1857 aa
AA seq
DB search
MGAGSARGDRGTAAAAAARGGGFLFSWILVSFACHLASTQGAPEDVDVLQRLGLSWTKAG
NPAPQGVIPFQSGFIFTQRARLQAPTSAIIPAALGTELALVLSLCSHRVNHAFLFAVRSR
KHKLQLGLQFLPGKTVVHLGSRRSVAFDLDMHDGRWHHLALELRGHTVTLVTACGQRRVP
VLLPFHRDPALDPGGSFLFGKMSPHAVQFEGALCQFSIYPVTQVAHNYCTHLRKQCGQAG
TYQSPLGPLFPQDSGRSFTFHSDLALLGLENLTTATPALGSRPAGRGPGVTVVPTKPRRT
SPTNPHQQIAVGGPAQTPLPPAKLSAGKALAPALPASLAGSTRMPHPAVAQQSQKITATK
IPKNLPNKPSVPSPSSVSARNSHPTQNTAPPSFTKSTPPTQKQVPPTSRPVPAKVFRPTE
KPIQRNPGMPRSPPPSTRPLPPATSSSKKHTPSVVQTEAKMTSCDSKPASACTSTHKPLP
SAALASSPAPTPGSTRTPRPPATMVPPTSGTSAPRTAPAIPTPGSTPTRSKKPTGSDASK
KAGPKSSPRKPVPLRPGKAARDVPLSDVTTKPSPRQSQPSQQTIPALVLAPAQFLSSSPR
PTSSGYSFFHLAGSTPFPLLMGPPGPKGDCGLPGPPGLPGLPGIPGARGPRGPPGPYGNP
GLPGPPGAKGQKGDPGLSPGKAHDGAKGDMGLPGLSGNPGPPGRKGHKGYPGPAGHPGEQ
GQPGPEGSPGAKGYPGRQGLPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVPGKR
GKMGMPGFPGIFGERGPPGLDGNPGELGLPGPPGVPGLIGDLGVLGPIGYPGPKGMKGLM
GSVGEPGLKGDKGEQGVPGVSGDPGFQGDKGSQGLPGFPGARGKPGPLGKVGDKGSIGFP
GPPGPEGFPGDIGPPGDNGPEGMKGKPGARGLPGPRGQLGPEGDEGPMGPPGAPGLEGQP
GRKGFPGRPGLDGVKGEPGDPGRPGPVGEQGLMGFIGRVGEPGIVGEKGDRGMMGPPGAP
GPKGSMGHPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRWGPRGPDGPAGEQGSRGLK
GSPGPQGRPGQPGQQGVAGERGHLGSRGFPGIPGPSGPPGTKGLPGEPGPQGPQGPIGPP
GEMGPKGPPGAVGEPGLPGEAGMKGDLGPLGTPGEQGLIGQRGEPGLEGDSGPMGPDGLK
GDRGDPGPDGEHGEKGQEGLMGEDGPPGPPGVTGVRGPEGKSGKQGEKGRTGAKGTKGYQ
GQLGEMGVPGDPGPPGTPGPKGSRGSLGPTGAPGRMGTQGEPGLAGYDGHKGIVGPLGPP
GPKGEKGEQGEDGKAEGPPGPPGDPGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQ
PGHPGPRGRPGPKGSKGAEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVGRQGPEGIAGP
DGLPGRDGQAGQQGEQGDDGDPGPMGPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQLGP
HGKRGTEGRTGLPGNQGEPGSKGQPGDSGEMGFPGMAGLFGPKGPPGDIGFKGIQGPRGP
PGLMGKEGIIGPLGILGPSGLPGPKGDKGSRGDWGLQGPRGPPGPRGRPGPPGPPGRPIQ
FQQDDLGAAFQTWMDTNGALRPEGYSYPDRLVLDQGGEIFKTLHYLSNLIQSIKTPLGTK
ENPARVCRDLMDCEQKMVDGTYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKVEFA
ISRVQMNFLHLLSSEVTQHITIHCLNMTVWQEGTGQTPAKQAVRFRAWNGQIFEAGGQFR
PEVSMDGCKVQDGRWHQTLFTFRTQDPQQLPIISVDNLPPASSGKQYRLEVGPACFL
NT seq
5574 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgggatcggcgcggggggaccgaggcacagcggcggcggcggcggcgcgcggg
ggggggtttctcttctcctggatcttagtctcgtttgcctgtcacctggcctccacccaa
ggagctcctgaagatgtggacgtcctccagcggctgggcctcagctggacgaaggctggg
aaccctgcaccccagggagtcattcctttccagtcgggcttcatctttacgcagcgggcc
cggctccaggctcccacgagtgccatcattcctgccgccctgggcacagagctggcgctg
gtgctgagcctctgctcccaccgggtgaaccatgccttcctcttcgccgtccgcagccgg
aagcacaagctgcagctgggcctgcagttcctccccggcaagacggtcgtccacctgggg
tcccggcgctcagtggccttcgaccttgacatgcacgatgggcgctggcaccacctggcc
ctcgagctccggggccacacagtcactttggtgacagcctgcgggcagcgccgggtgcct
gtcctgctgcctttccacagggaccctgcactcgaccctgggggctccttcctctttggg
aagatgagcccgcacgcagtccagtttgaaggtgctctgtgccaattcagtatctaccct
gtgacgcaggtcgctcacaattactgtacccacctgaggaagcagtgtggacaggctggc
acataccagtccccgctgggacctctcttcccccaagactccggcagatctttcaccttc
cattccgaccttgccctgctaggcctggagaacttgaccactgccacaccagccctgggg
tcacggccagcaggcaggggacctggggtgactgtggtgcccaccaagccccgaaggact
agccccacaaaccctcaccagcagatcgcggtgggaggcccagcccaaaccccactgcca
cctgccaagctgtcagccggtaaggcccttgctcctgcgctcccagcctctcttgccggc
tctaccagaatgcctcaccctgcggtcgctcaacagtcacagaagatcacagccaccaaa
atccccaaaaacctccctaataagccttcagtcccttctccttcaagtgtctctgccaga
aactcccatcctacccagaacacagctccgccttcatttacaaagtcaaccccacccacc
cagaagcaagtgccacctacttcccgtccagttcctgccaaagtcttccgtcccacagag
aagcccatccagaggaacccgggaatgcccaggtccccaccgcccagcacccggccccta
cctcctgctaccagctcctctaaaaaacacactccctcagtagttcagactgaggccaag
atgaccagctgtgacagtaagccagcctctgcctgcaccagcacccacaaacctctccca
tccgctgctctagcctcatctcctgcccctactcctggttccaccaggactcctcggcca
ccagccacgatggtgcctccaacctcgggcaccagtgctcccagaacagcacctgccatc
cccactcctggctcaactcccaccagaagcaagaagcccactggatcggacgcctcaaag
aaagctggacccaagagcagcccccggaagcccgtccccctcagacctgggaaggcagcc
agggatgtccccttgagtgatgtgacaaccaagcctagccccagacagtcccagcccagt
cagcagaccatcccagccctggtactggccccggcgcaattcctgtcctccagcccccgg
cccacaagcagtggctattcgttcttccacctggcaggatctacgcctttccctctgcta
atggggcctccagggcccaagggagactgtggtttgccgggtccccctgggctgcctggg
ctgcctggaatccctggtgcacgcgggcctcggggtcctcctgggccttatggaaatcca
ggtctccccggccctcccggagccaaaggacagaaaggggatccagggctctcaccagga
aaggcccatgatggggcaaagggcgacatgggcttgcccgggctctctgggaatccagga
cctccgggacgaaagggacacaagggctatcctggaccggcagggcaccctggagaacag
gggcagccaggacctgagggcagcccaggggccaaaggttaccctggcaggcaggggcta
cctggaccggtaggagatcccggccccaaaggcagcaggggctacattggactcccagga
ctcttcggcttgccaggatctgatggagagcgaggcctgcctggcgttcctggcaagagg
ggcaagatgggtatgccggggtttcctggaatctttggggaaagaggccctcccggactg
gatggaaaccctggagaactgggcctgccaggcccccctggagtccccggcctcattggt
gacttgggagtgttgggtccgattggctacccaggacccaagggcatgaagggactgatg
ggcagcgtgggggagcccggactgaaaggtgataagggtgaacaaggggttccaggtgtg
tcaggagaccccggattccaaggagacaaggggagccaggggttgccagggttccctggc
gcacgggggaagccagggcctctgggcaaagttggagacaaaggatctattgggtttccc
gggccccctggacccgagggattcccaggagacatcggcccccctggggacaatggccca
gaaggcatgaagggtaagcctggagcccgaggcctgccgggaccccgtgggcagctgggg
cccgagggagatgagggacccatggggccaccaggggcccctggcttggagggtcagcct
ggcaggaaggggtttcctgggaggcccggcctggatggcgtgaagggggaaccaggagat
cctggccggccggggcctgtgggagagcagggactcatgggattcattggtcgggtcggg
gagccaggaatcgtgggagaaaagggtgatcgtggcatgatgggacccccaggtgcacct
ggacccaaggggtcgatgggtcatcctggaatgccaggtggtatggggacccctggagag
cctggaccccagggtcctccaggatctcgaggcccaccaggcatgaggggagcaaaggga
cgttggggcccccgaggaccggatggaccagctggggagcaagggtcccggggcctgaag
ggctctccaggaccccagggcagaccgggccagcctggacagcagggtgtggctggtgag
cgaggccacttgggctcgcgaggctttcctggcatcccgggtccctcaggccccccaggc
accaagggcctcccaggagaaccgggccctcagggaccccaggggccaattgggcctcca
ggagaaatgggacccaaggggcctccgggtgcagtgggagaaccaggccttcctggggaa
gccgggatgaagggtgaccttggacccctgggcacccctggggagcagggcctcattggg
caacggggagagccaggcctcgagggtgacagtggccccatggggcctgatgggctgaag
ggggacaggggagacccagggcctgatggagaacatggcgagaaaggccaggaagggctg
atgggtgaggatgggccccccggcccccctggtgtcactggtgtccggggtcctgaaggg
aaatcagggaagcaaggcgagaagggccgcactggagccaagggcaccaagggataccaa
ggacagctgggtgagatgggcgtccctggagaccccggaccccctggcaccccaggccct
aaagggtcccggggcagcctgggaccaacgggtgctccgggacgcatggggacccaagga
gaaccaggactggctggttatgatggacacaaaggcattgtgggacccctcggacctcct
gggccaaaaggcgaaaagggggagcagggcgaggatggcaaggctgaggggccccctggg
ccgcctggagatccgggccctgtgggtgatcgaggagaccgtggggaacccggggaccct
ggatacccaggacaggagggtgtgcagggcctccgtggaaagccaggccagcagggccaa
cccgggcatccgggaccccgggggcggccgggacccaaaggatcaaaaggtgcagaggga
ccaaagggaaagcaaggcaaggcaggggccccaggccggaggggtgtccagggcctgcag
gggctgccggggccccggggagtggtgggaagacagggccccgagggcatcgctggacca
gatgggcttcctggcagggacgggcaagcaggacagcagggggagcagggagacgatggg
gaccctggtcccatgggccctgccgggaagagaggaaatccaggtgtggctggcttgcct
ggagcacaggggcccccaggattcaagggtgagagtgggttacctggacagctgggtccc
catggcaagcgagggaccgagggcagaacagggctccctggaaaccagggggagcctggg
tcgaaaggccagccgggcgactccggcgagatgggcttcccaggaatggcaggtctcttc
ggacccaagggcccccctggagacatcggcttcaaaggcatccagggccctcgggggcca
cctggcttgatgggaaaggaaggcatcatcgggccccttggaatcctgggaccttcggga
ctcccgggtccgaagggtgacaaaggcagccgtggggactggggattgcaaggtccgagg
ggtcctcccggccccagagggcggcccggccctccgggtcctccagggcgtcctatccaa
tttcaacaagacgaccttggggcagctttccagacgtggatggacaccaacggagcactc
agaccagagggttatagctatccagaccggctggtgctggaccagggaggagagatcttt
aaaaccttacactacctcagcaacctcatccagagcattaagacgcccctgggcaccaaa
gagaaccccgcccgggtctgcagggacctcatggactgtgagcagaagatggtggatggt
acctactgggtggatccaaaccttggctgctcgtctgacaccatcgaagtctcctgcaac
ttcacgcacggtggacagacgtgtctcaagcccatcacggcctccaaggtcgagtttgcc
atcagccgggtccagatgaatttcctgcacctgctaagctccgaggtgacccagcacatc
accatccactgccttaacatgactgtgtggcaggagggcactgggcagaccccagccaag
caggctgtgcgcttccgggcctggaatggacagatttttgaggctgggggtcagttccgg
cctgaggtgtccatggatggctgcaaggtccaagatggccgctggcatcagacgctcttc
accttccggacccaagacccccaacagctgcccatcatcagtgtggacaatctccctcct
gcctcatcagggaagcagtaccgcctggaagttggacctgcatgcttcctctga
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integrated database retrieval system
