Callithrix jacchus (white-tufted-ear marmoset): 100410988
Help
Entry
100410988 CDS
T03264
Symbol
FDFT1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc00100
Steroid biosynthesis
cjc01100
Metabolic pathways
Module
cjc_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
100410988 (FDFT1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
cjc01006
]
100410988 (FDFT1)
Enzymes [BR:
cjc01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
100410988 (FDFT1)
Prenyltransferases [BR:
cjc01006
]
Terpene biosynthesis
Squalene/phytoene synthase
100410988 (FDFT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Octopine_DH
Motif
Other DBs
NCBI-GeneID:
100410988
NCBI-ProteinID:
XP_002756812
Ensembl:
ENSCJAG00000003988
UniProt:
F6TRY2
LinkDB
All DBs
Position
13:complement(7117964..7160056)
Genome browser
AA seq
417 aa
AA seq
DB search
MEFVKCLGHPEEFYNLVRFRIGGKRKVMPKMDQDSLSSSLKTCYTYLNQTSRSFAAVIQA
LDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFTESKEKDRQ
VLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLNKHVTSEQEWDKYCHYVAGLVG
IGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQEGREFWPQEVWSRYV
KKLGDFAKPENIELAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATL
AACYNNQQVFRGVVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYHRIPDSDPSSSKTR
QIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSLQYLTTLSQVTEDYVQTGEH
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atggagttcgtaaagtgcctaggccaccccgaggagttctacaacctggtgcgcttccgc
atcgggggcaagcggaaggtgatgcccaagatggaccaggactcgctcagcagcagcctg
aaaacttgctacacgtatctgaatcagacgagtcgcagtttcgcagctgttatccaggcg
ctggatggggaaatgcgcaatgcagtgtgcatattttatctggtcctccgagctctggac
acgctggaagatgacatgaccatcagtgtggagaagaaggtcccgctgttacacaacttc
cactctttcctttaccagccagactggcggttcacggagagcaaggagaaggaccgccag
gtgctggaggacttcccaacgatctccctcgagtttagaaatctggctgagaaataccaa
acggtgatcgctgacatttgccggagaatgggaattgggatggcagagtttttgaataag
catgtgacctctgaacaggagtgggacaagtactgccactatgttgctgggctggtagga
attggcctttcccgtctcttctcggcctcagagttcgaagaccccttagttggtgaagat
acagaacgtgccaactccatgggcctgtttctgcagaaaacaaacatcattcgtgactat
ctggaagaccagcaagaaggaagagagttttggcctcaagaggtttggagcaggtatgtt
aagaagctgggggattttgccaagccggagaatattgagttggccgtgcagtgcctgaat
gaacttataaccaacgcgctgcaccacatcccagacgtcatcacctacctttcgagactc
agaaaccagagcgtgtttaacttctgtgctatcccacaggtgatggccattgccactttg
gctgcctgttacaataaccagcaggtgttcagaggggtagtgaagattcggaaagggcaa
gccgtgaccctgatgatggatgccaccaacatgccagctgtcaaagccatcatatatcag
tatatggaagagatttaccatagaatccccgactcagacccatcttccagtaaaacgagg
cagatcatctccaccatccggacgcagaatcttcccaactgtcagctgatctcccgaagc
cactactcccccatctacctgtcctttgtcatgctcttggctgccctgagcttgcagtac
ctgaccacactctcccaggtcacggaagactatgttcagactggagaacactga
DBGET
integrated database retrieval system
