Callithrix jacchus (white-tufted-ear marmoset): 100411104
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Entry
100411104 CDS
T03264
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100411104 (COL13A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cjc00536
]
100411104 (COL13A1)
Glycosaminoglycan binding proteins [BR:
cjc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100411104 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
100411104
NCBI-ProteinID:
XP_035124003
Ensembl:
ENSCJAG00000016435
LinkDB
All DBs
Position
12:complement(56575373..56666175)
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AA seq
621 aa
AA seq
DB search
METPLLKNSWTLLPRQPPTCPYSNDTDPGIFPSLSGPPGPTGRPGLPGDKGAIGMPGRVG
VKGQPGEKGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGEMGLTGP
PGQPGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQSQASIQGPPGPPG
PPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGTPG
IAVAGMKGEPGIPGTKGDPGAEGKPGPPGLLGKRGQRGEKGAAGSPGLPGLLGQKGEKGD
AGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQQGDKGEPGAAGEPGAAGEPGAA
GPKGSKGEPGKGEMVDYNGNISEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGL
PGPPGHDGEKGPRGKPGDMGPPGPQGPPGKNGPPGMKGENGNPGSPGEKGEKGETGQAGL
PVPGPPGPEGPPGPPGLQGAPGPKGEAGLDGAKGEKGVQGEKGDRGPLGLPGTPGPIGVP
GPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAP
GLDAPCPLGEDGLPVQGCWNK
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggaaacccctctgctgaagaattcttggacactgcttcccagacagcctcccacctgc
ccctacagcaatgacactgacccaggcatttttccctctctttcaggacctcctggtccc
actggaaggcctggactcccaggggacaaaggtgccattgggatgcctggacgtgtggga
gtaaagggtcaaccaggcgagaaggggtcccctggagatgctgggctgtccatcattggt
ccccgcggtccccctggtcaaccaggcactcgaggttttcctggatttccgggtcccatt
gggctggacggtaaaccgggccacccgggaccaaagggggagatgggtctgacaggtccc
ccaggacagccgggacctcagggacaaaaaggagaaaagggtcagtgtggagagtaccca
caccggctgctgcctctcctcaattcagtgcgactggctccacccccggtcataaaaagg
cggacgttccagggtgaacagagccaggccagcatccaaggtccaccagggcccccaggg
ccccctggacccagtggacctctggggcacccaggactgccagggcctatggggccacct
ggcttacctgggcctcctggaccaaagggagatccagggatccagggctaccacggccgg
aagggagaacggggcatgccagggatgccaggcaagcatggagccaaggggactcctgga
atcgctgtggctggaatgaagggtgagccagggatcccaggaaccaagggagacccagga
gcagaagggaagccggggcccccaggtttgctgggaaaaagggggcagaggggtgagaag
ggggctgcaggctcccctgggcttcctggcctcttggggcagaagggagagaaaggcgat
gctggcaactccattggaggaggcagaggggaacctggccctccagggctccctgggccc
ccagggccaaagggagaagcaggtgtcgatggccaggttggccccccagggcagcaagga
gacaagggggaacctggagcagcaggagaaccgggagcagctggagaaccgggagcagct
ggccccaagggctccaagggagaaccaggaaagggagagatggtggattacaatggaaac
atcagtgaggctctccaggagatccggacgctggccttgatggggcctcctggtcttcct
gggcaaatcggcccacctggagctccagggattccaggccagaagggggagattggactg
ccaggccctccaggacacgatggggaaaagggacctcgcggtaaaccaggagacatgggc
cctcctggtccccaaggccccccaggaaagaatggacctccaggaatgaagggagaaaac
gggaacccagggagcccaggagagaagggggagaaaggggagacaggacaagcaggcttg
ccggttcctgggccaccagggccagaggggccccctggacctccggggcttcaaggtgct
cctggaccaaagggggaagcaggactagatggagcaaaaggagagaaaggtgtccaggga
gaaaaaggagaccgtggtcccctgggactacccggtactccaggaccaattggagttcca
ggcccagcaggaccaaagggcgagaggggcagcaaaggagaccctgggatgacaggacca
acgggagcagctgggcttcctggtttacatggaccacctggggacaagggaaaccggggg
gagagggggaagaaaggctctagagggcctaaaggggataagggagaccaaggagcgcct
ggattagatgccccctgcccgttgggcgaagacggcttaccagtccagggctgctggaac
aagtga
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