Callithrix jacchus (white-tufted-ear marmoset): 100411856
Help
Entry
100411856 CDS
T03264
Symbol
PKD2
Name
(RefSeq) polycystin-2 isoform X1
KO
K04986
polycystin 2
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cjc03037
]
100411856 (PKD2)
04040 Ion channels [BR:
cjc04040
]
100411856 (PKD2)
Cilium and associated proteins [BR:
cjc03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
100411856 (PKD2)
Ion channels [BR:
cjc04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
100411856 (PKD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PKD_channel
Polycystin_dom
Ion_trans
Fer4_24
EF-hand_1
EF-hand_7
SU10_portal
Motif
Other DBs
NCBI-GeneID:
100411856
NCBI-ProteinID:
XP_002745652
Ensembl:
ENSCJAG00000006321
UniProt:
U3F411
F7GM51
LinkDB
All DBs
Position
3:complement(105698806..105773768)
Genome browser
AA seq
973 aa
AA seq
DB search
MVNSRRVQPQQPGDAKQSPAPRAPGPGRLMAGGAAVGASLAARGGLREQRGLEIEMQRIR
QAAARDPPAGASASPSPPLSSCSRQAWSRDNPGFEAEEEEEEEEEEEVEGEEGGMVVEMD
VEWRPGSRRSAASSAVSSAGARSRGLGGYHGAGHPSGRRHRREDQGPPCPSPTGGGDPLH
RHLPLDGQPPRVAWAVRLVRGLRGLWGTRLMEESSTNREKYLKSVLRELVTYLLFLIVLC
ILTYGMMSSNVYYYTRMMSQLFLDTPVSKTEKTNFKTLSSMEDFWKFTEGSLLDGLYWKM
QPSNQTEADNRSFIFYENLLLGVPRIRQLRVRNGSCSIPQDLRDEIKECYDVYSVSSEDR
APFGPRNGTAWIYTSEKDLNGSSHWGIIATYSGAGYYLDLSRTREETAAQVASLKKNVWL
DRGTRATFIDFSVYNANINLFCVVRLLVEFPATGGVIPSWQFQPLKLIRYVTTFDFFLAA
CEIIFCFFILYYLVEEILEIRIHKLHYFRSFWNCLDVLIIVLSAVAIGINIYRTSNVDVL
LQFLEDQNTFPNFEHLAYWQIQFNNVAAVIVFFVWIKLFKFINFNRTMSQLSTTMSRCAK
DLFGFAIMFFIIFLAYAQLAYLVFGTQVDDFSTFQECIFTQFRIILGDINFAEIEEANRV
LGPIYFTTFVFFMFFILLNMFLAIINDTYSEVKSDLAQQKAEMELSDLIRKGYHKALVKL
KLKKNTADDISESLRQGGGKLNFDELRQDLKGKGHTDAEIEAIFTKYDQDGDQELTEHEH
QQMRDDLEKEREDLDLDHSSLPRPMSSRSFPRSLDDSEEDDDEDSGHSSRRRGSISSGVS
YEEFQVLVRRVDRMEHSIGSIVSKIDAVIVKLEIMERAKLKRREVLGRLLDGVAEDERLG
RDGEIHREQMERLVREELERWESDDAASQISHGLGTPVGLNGQPCPRSSRPSSSQSTEGM
EGAGGNGNSNVHI
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggtaaactccaggcgcgtgcagccgcagcagcccggggacgccaagcagtcgcccgcg
ccccgcgcgccgggcccgggccggctgatggcgggtggcgctgcagtgggcgccagcctc
gcagccaggggcggcctccgcgagcagcggggcctggagatcgagatgcagcgcatccgg
caggcggccgcgcgggaccctccggccggagcctcggcttccccttctcctccgctgtcg
tcgtgctcccggcaggcgtggagccgcgataacccaggcttcgaggccgaggaggaggag
gaggaggaggaggaagaggaggtggaaggagaagaaggcggaatggtggtggagatggac
gtggagtggcgcccgggcagccggaggtcggccgcctcctcggctgtgagctccgcgggt
gcgcggagccgggggcttgggggctaccacggcgcgggccacccaagcgggaggcggcac
cggcgagaggaccagggcccgccttgccccagcccgaccggcggcggggacccgctgcat
cgccacctacccttggacgggcagccgccccgagtggcctgggccgtgaggctggttcgc
gggttgcgaggtctctggggaacaagactcatggaggaaagcagcactaaccgagagaaa
taccttaaaagtgttttacgggaactggtcacatacctcctttttctcatagtcttgtgc
atcttgacctatggcatgatgagttctaatgtgtactactatacccggatgatgtcacag
ctcttcctagacacccccgtgtccaaaacggagaaaactaactttaaaactctgtcttca
atggaagacttctggaagttcacagaaggctccttattggatgggctgtactggaagatg
cagcccagcaaccagactgaagctgacaaccgaagttttatattctacgagaacctgctg
ttaggggtaccacgcatacggcaactccgagtcagaaatggctcctgctctatcccccag
gacttaagagatgaaattaaagagtgctatgatgtctactctgtcagtagtgaagatagg
gctccctttgggccccgaaatggaaccgcttggatctacacaagtgaaaaagacttgaat
ggtagtagccactggggaatcattgcaacttacagtggagctggctactacttggatttg
tcaagaacaagagaggaaacagctgcacaagttgctagcctcaagaaaaacgtctggctg
gaccgaggaaccagggcaacttttattgacttctcagtgtacaatgccaacattaacctg
ttctgtgtggtcaggttattggtggaattcccagcaacaggcggtgtgattccatcttgg
caatttcagcctttaaagctgatccgatatgtcacaacttttgatttcttcctggcagcc
tgtgagattatcttttgtttctttatcctttactatttggtggaagagatattggaaatt
cgcattcacaaactccactatttcaggagtttctggaattgtctggatgttctgatcatt
gtgctatcagcggtagcgataggaattaacatatacagaacatcaaatgtggatgtgctg
ctacagtttctggaagatcaaaatactttccccaactttgagcatctggcatattggcaa
atacagttcaacaatgtagctgccgtcatagtattttttgtctggattaagctcttcaaa
ttcatcaattttaacaggaccatgagccagctctccacaaccatgtctcgatgtgccaaa
gacctgtttggctttgctattatgttcttcattattttcctggcatacgctcagttggca
taccttgtctttggcactcaggtcgatgacttcagtactttccaagagtgtatcttcact
caattccgtatcattttgggcgatatcaactttgcagagattgaggaagctaatcgagtt
ttgggaccaatttatttcactacatttgtgttctttatgttcttcattcttttgaatatg
tttttggccatcatcaatgatacttactctgaagtgaaatctgacttggcacagcagaaa
gctgaaatggaactctcagatcttatcagaaagggctaccataaagctttggtgaaacta
aaactaaaaaaaaatactgcagatgacatttcagagagtctgcggcaagggggaggcaag
ctaaactttgacgaacttcgacaagatctcaaagggaagggccatactgatgcagagatt
gaagcaatattcacaaagtacgaccaagatggtgaccaagaactgaccgaacacgaacat
cagcagatgagagatgacttggagaaagagagggaggacctggatttggatcacagttct
ttaccacgtcccatgagcagccgaagtttccctcgaagcctggatgactctgaggaggat
gatgatgaagatagtggacatagctccagaaggaggggaagcatttctagtggagtttct
tacgaggagtttcaagtcctggtgagacgagtggaccgtatggagcattccatcggcagc
atcgtgtccaaaatcgacgccgtgatcgtgaagctggagatcatggagcgggccaaactg
aagaggagggaggtgctgggaaggctgctggatggggtggccgaggatgaaagactgggt
cgtgacggtgaaatccatagggaacagatggaacggctagtgcgggaagagttggaacgc
tgggaatccgatgatgcagcttcccagatcagtcatggtttaggcacgccagtgggacta
aatggtcaaccttgccccagaagctcccgcccatcttcctcccagtctacagaaggcatg
gaaggtgcaggtggaaatgggaattctaatgtacacatatga
DBGET
integrated database retrieval system
