Callithrix jacchus (white-tufted-ear marmoset): 100412026
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Entry
100412026 CDS
T03264
Symbol
PDZRN4
Name
(RefSeq) PDZ domain-containing RING finger protein 4 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cjc04121
]
100412026 (PDZRN4)
Enzymes [BR:
cjc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100412026 (PDZRN4)
Ubiquitin system [BR:
cjc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
100412026 (PDZRN4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4
zf-RING_2
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
Sina_ZnF
zf-rbx1
PDZ_Tricorn
TRAF3_RING
zf-RING_6
U-box
Motif
Other DBs
NCBI-GeneID:
100412026
NCBI-ProteinID:
XP_002752412
Ensembl:
ENSCJAG00000017792
UniProt:
F7DYD9
LinkDB
All DBs
Position
9:complement(30532640..30945888)
Genome browser
AA seq
1036 aa
AA seq
DB search
MGFALERFAEAVDPAFECKLCGQVLEEPLCTPCGHVFCASCLLPWAVRRRRCPLQCQPLA
PRELYRVLPLRSFIQKLRVQCDYRSRGCGHSVRLQELEAHVEHCDFGPASHLRSLGGCAS
GPDSGEVPAREGCGPAPGAGWGGGARGGPPGGLCGRGRGPRPRVLAWRRREKALLAQLWA
LQGEVRLTARRYQEKFTQYMAHICNFVGDLGGGHRRDGENKPFTIVLERENDTLGFNIIG
GRPNQNNQEGTSTEGIYVSKILENGPADRADGLEIHDKIIEVNGKDLSKATHEEAVEAFR
NAKEPIVVQVLRRTPLSRPAYGTAPEVQLMNASTQTDITFEHIMALAKLRPSTPPVPDIC
PFLLSDSCHSLHPMGHEFYEDNEYISSLPADADRTEDFEYEEVELCRVSSQEKLGLTVCY
RTDDEEDTGIYVSEVDPNSIAAKDGRIREGDRILQINGEDVQNREEAVALLSNDECKRIV
LLVARPEIQLDEGWLEDERNEFLEELNLEMLEEEHNEAMQPTANEVEQPKKQEEEEGTTD
TATSSSNNHEKDSGVGRTDESLRNDESSEQENAVEDPNSTSLKSKRELGQSQDTLGSVEL
QYNESLMSGEYIDSDSIGNQEEDCERFRKLLELKCKIQNHGEYDLYYSSSTIECNQEEQE
GVEHELQLLNEELRNIELECQNIMQAHRLQKVTDQYGDIWTLHDGGFRNYNTSIDMQRGK
LDDIMEHPEKSDKDSSSAYNTAESCRSTPLAVDRSPDSSLPRMINLTNKKNVRSTMAANQ
SSYEQSSKESTSTKVKTTEQGCSAESKEKILEGSKLPDQEKAVSEHIPYLSPYHSSSYRY
ANIPAHARHYQSYMQLIQQKSAVEYAQSQLSLVSMCKESQKCAEPKMEWKVKIRSDGTRY
ITKRPVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWSKEERKQHLVRAKEQRRRR
EFMMRSRLECLKESPQSGSEGKKEISIIELSHKKMMKKRNKKILDNWMTIQELMTHGAKS
PDGTRVHNAFLSVTTV
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgcactggagcgcttcgcagaagccgtggacccggctttcgagtgcaagctg
tgcggccaggtgctggaagagccgctgtgcacgccatgcgggcacgtcttctgcgccagc
tgcctgctgccctgggcggtgcggcggcgccggtgcccgctgcagtgccagcccctggcg
ccccgcgagctgtaccgggtgctgccgctgcgcagcttcatccaaaagctgcgcgtccag
tgtgactaccgctcccgcggctgtggccactccgtccggctgcaagagctggaggcgcac
gtcgaacactgcgacttcggacctgccagccacctccgcagcctcgggggctgcgcttcg
gggccggacagtggggaggtgccggcgcgggagggctgcgggccggcaccaggggccggc
tggggcgggggcgctcgcggggggccgccgggcggcctctgtggccgcgggcggggaccc
aggcctcgggtactcgcctggaggcggcgcgagaaggcgctgctggcgcagctgtgggcg
ctgcagggcgaggtgcggctcactgcgcgcaggtaccaggagaagttcacgcaatacatg
gctcacatctgcaacttcgtcggggacctgggtggcggacaccgcagggatggagaaaat
aagccattcactattgtgttagaaagagaaaatgatactttgggattcaatattatagga
ggtcgaccaaatcagaataatcaggaaggaacatcaactgaagggatttatgtttcaaaa
attttagaaaatggacctgccgacagagcagatggcctggagattcatgacaaaatcatt
gaggtcaatgggaaggatctttcaaaggccactcatgaagaagcagtggaagcttttcga
aatgccaaggagcccattgtggtgcaggtgttaaggcgaacacctctgagtagaccggcc
tatgggacggccccagaagtgcagctcatgaatgccagcactcagacggacatcaccttc
gaacacatcatggccctggccaagcttcggccatctacccctccagtgccagacatctgt
ccattcctgctctcagacagctgccattctctacatccaatggggcatgaattttatgag
gacaatgagtatatttccagcttacctgctgatgcagacagaacagaggactttgaatat
gaggaggttgagttgtgtcgtgttagcagtcaagagaagctgggcctgacagtctgttac
cgaacagatgatgaagaagacaccggtatttatgtcagcgaggtagatccaaatagcatt
gctgccaaagatggccggattcgagaaggggatcgtattttgcaaataaatggggaagat
gtccagaatcgagaagaagcagtggctttgctgtctaatgatgagtgtaagagaatcgtg
ctgcttgttgcaaggccagagattcagctggatgaaggctggctggaagatgaaaggaat
gaattcttagaggagttaaacttggagatgttggaagaagagcataatgaagcaatgcaa
cccactgccaatgaggtggagcagccaaaaaagcaagaggaagaagaaggcacaacagac
actgcaacatcctcatccaacaaccatgagaaggacagtggagtaggacgcacagatgaa
agcttgcgaaatgatgagagctcagagcaggagaatgcagttgaggaccccaacagcaca
tctttgaagagcaagagagagctagggcagagtcaagacactctaggaagcgttgaactt
cagtacaatgagagcctcatgtctggtgaatacattgactcagacagcattggcaaccaa
gaagaggactgtgaaagattcaggaagctcttggagctcaaatgcaagattcaaaatcat
ggagagtatgacctgtattactcaagcagcacaattgaatgcaatcaagaggagcaagag
ggagtggagcatgagctacagctgcttaatgaagagctgagaaacattgagctcgagtgt
cagaatatcatgcaggctcacaggctccagaaagtgacagaccagtatggagacatctgg
acattgcatgatggaggattccggaattataacaccagcatagacatgcaaaggggaaag
ctggatgacatcatggaacatccagaaaagtctgataaggacagttctagtgcttacaac
acagctgagagctgcagaagtactccgctcgctgtagaccgttcccctgacagctccctt
ccaaggatgatcaacctcaccaataagaaaaacgtgagaagtacaatggcagccaaccag
tcctcttatgaacagagcagtaaagagtcaacctccaccaaagtgaaaaccacagagcaa
ggttgtagtgctgaaagcaaggagaagattttggaaggcagcaagcttcctgaccaagag
aaggcagtcagcgaacacatcccttacctctctccttaccacagctcctcatatagatat
gcgaacatcccagcacatgcccggcattatcaaagctacatgcagttaatccaacagaaa
tctgcagtcgagtatgctcagagtcagctcagcttggtaagcatgtgcaaggagtctcaa
aagtgtgcagagcccaagatggaatggaaggtgaaaattaggagcgatgggacacggtac
atcacaaagagaccagtgcgagaccgcatcctgaaggaacgtgccttaaagatcaaggag
gagcggagtggcatgaccacagatgatgacaccatgagcgagatgaaaatggggcgctac
tggagcaaagaggagagaaagcagcacctggttagggccaaagagcagcgccgtcgccga
gagttcatgatgcggagccggttagagtgtctcaaggaaagccctcagagtggcagcgag
ggcaagaaggagatcagtatcattgaactgagtcacaaaaagatgatgaaaaagagaaac
aaaaaaattttggacaactggatgacaatccaagaactgatgacccatggggccaagtct
ccggatggcacaagagtccataatgccttcttgtcggtgaccacagtatga
DBGET
integrated database retrieval system
