Callithrix jacchus (white-tufted-ear marmoset): 100412480
Help
Entry
100412480 CDS
T03264
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X6
KO
K12821
pre-mRNA-processing factor 40
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100412480 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cjc03041
]
100412480 (PRPF40A)
Spliceosome [BR:
cjc03041
]
Complex A
U1 snRNP components
U1 related factors
100412480 (PRPF40A)
Complex B
100412480 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
100412480
NCBI-ProteinID:
XP_002749482
Ensembl:
ENSCJAG00000015541
LinkDB
All DBs
Position
6:74116031..74173003
Genome browser
AA seq
994 aa
AA seq
DB search
MQATPSEAEAGGESPQSCVSAAHSDWTSAKPVSLLAPLVPPRSAGQPLTFSPSGRQPLRS
LLVGMCSGSGRRQSSLSPTMRPGTGAERGGLMMGHPGMHYAPMGMHPMSQRANMPPVPHG
MMPQMMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNSMDVAAGTASGAK
SMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQ
TKESRWAKPKELEDLEGYQNTIVAGSLITKSNLHAMIKAEESSKQEECTTTSTAPVPTTE
IPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANANASTSTSNTVSGTVPVVPEPEVTSIVA
TVVDNENTVTISTEEQAQLTSTPAIQDQSVEVSSNTGEETSKQETVADFTPKKEEEESQP
AKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNA
YKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERD
RLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTF
AEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHE
HGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDIL
KDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKM
KRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHE
CQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESE
RSYKKSKKHKKKSKKRRHKSDSPESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKT
GKDSGNWDTSGSELSEGELEKRRRTLLEQLDDDQ
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgacgccgagtgaggctgaggctgggggcgaatcgccgcagagctgcgtgtcg
gcggcgcattctgattggacctcggcgaagcctgtcagcctgttggccccgctggtcccg
ccccgtagcgcagggcagcctttaacctttagccccagcgggcgccagccactcagatcg
cttcttgttggtatgtgtagcggcagtggccgccggcagagcagtctgagcccgacgatg
aggccagggacgggagctgagcgtggaggcctcatgatggggcaccctggcatgcattat
gccccaatgggaatgcaccctatgagtcagagagcaaatatgcctcctgtacctcacgga
atgatgccgcagatgatgccccctatgggagggccaccaatgggacaaatgcctggaatg
atgtcatcagtaatgcctggaatgatgatgtctcatatgtctcaggcttccatgcagcct
gccttaccgccaggagtaaatagtatggatgtagcagcaggtacagcgtctggtgcaaaa
tctatgtggactgaacataaatcacctgatggaaggacttactactacaacactgaaacc
aaacagtctacctgggagaaaccggatgatcttaaaacacctgctgagcaactcttatct
aaatgcccctggaaggaatacaaatcagattctggaaagccttactattataattctcaa
acaaaagaatctcgctgggccaaacctaaagaacttgaggatcttgaaggataccagaat
accattgttgctggaagtcttattacaaaatcaaacctgcatgcaatgatcaaagctgaa
gaaagcagtaagcaagaagagtgcaccacaacatcaacagccccagtccctacaacagaa
attccgacgacaatgagcaccatggctgcagcagaagcagcagctgctgttgttgcagct
gcagcagcagctgcagcagctgctgctgcagccaatgctaatgcttccacttctacttct
aatactgtcagtggaactgttccagttgttcctgagccagaagttacttccattgttgct
actgttgtagataatgagaatacagtaactatttcaactgaggaacaagcacaacttact
agtacccctgctattcaggatcaaagtgtggaagtatccagtaatactggagaagaaaca
tctaagcaagaaactgtagctgattttactcccaaaaaagaagaggaggagagccaacca
gcaaagaaaacatatacttggaatacaaaggaggaggcaaagcaagcttttaaagaatta
ttgaaagaaaagcgggtaccatcgaatgcttcatgggagcaagctatgaaaatgattata
aatgatccacgatacagtgctttggcaaagttaagtgaaaaaaagcaagcctttaatgcc
tataaagtccagacagagaaagaagaaaaagaagaagcaagatcaaagtacaaagaggct
aaagagtcctttcagcgttttcttgaaaatcatgagaaaatgacttccacaacgagatac
aaaaaagcagagcaaatgtttggagagatggaagtttggaatgcaatatcagaacgtgat
cgtcttgaaatctatgaagatgttttgttctttctttcaaaaaaggaaaaggaacaagca
aagcagttgcgaaagagaaactgggaagccttaaaaaacatacttgacaacatggctaat
gtaacatactctaccacgtggtctgaagcccagcaatatctgatggataatccaactttt
gcagaagatgaggagttacaaaacatggacaaagaagatgcgttaatatgctttgaagaa
cacattcgggctctggaaaaggaagaagaagaagaaaaacagaagagtttgctgagagaa
aggagacgacagcgaaaaaatcgggaatccttccagatatttttagatgaattacatgaa
catggacaactacattctatgtcatcttggatggaattgtatccaactattagttctgac
attagattcactaatatgcttggtcagcctggatcaactgcacttgatcttttcaagttt
tatgttgaggatcttaaagcacgttatcatgatgagaagaagataataaaagatattcta
aaggataaaggatttgtagttgaagtaaataccacttttgaagattttgtggcaataatt
agttcaactaaaagatcaactacattagatgctggaaatatcaaattggctttcaatagt
ttactagaaaaggcagaagcccgtgaacgtgaaagagaaaaagaagaggctcggaagatg
aaacgaaaagaatctgcatttaagagtatgttaaaacaagctgctcctccaatagaattg
gatgctgtctgggaagatatccgtgaaagatttgtaaaagagccagcatttgaagacata
actctagaatctgaaagaaagcgaatatttaaagattttatgcatgtgcttgagcatgaa
tgtcagcatcatcattcaaagaacaagaaacattctaagaaatctaaaaaacatcatagg
aaacgttcccgctctcgatcggggtcagattcagatgatgatgacagccattcaaagaaa
aaaagacaacgatcagagtctcgttctgcttcagaacattcttctagtgcagagtctgag
agaagttataaaaagtcaaaaaagcataagaagaaaagtaagaaaaggagacataaatct
gactctccagaatccgatgctgagcgagagaaggataaaaaagaaaaagatcgggaaagt
gaaaaagacagaactagacagagatcagaatcaaaacacaaatcgcctaagaaaaagact
ggaaaggattctggtaattgggatacttctggcagtgaactgagtgaaggggaattggaa
aagcgcagaagaacccttttggagcaactggatgatgatcaataa
DBGET
integrated database retrieval system
