Callithrix jacchus (white-tufted-ear marmoset): 100413282
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Entry
100413282 CDS
T03264
Symbol
SF3B3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100413282 (SF3B3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjc03021
]
100413282 (SF3B3)
03041 Spliceosome [BR:
cjc03041
]
100413282 (SF3B3)
03036 Chromosome and associated proteins [BR:
cjc03036
]
100413282 (SF3B3)
Transcription machinery [BR:
cjc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
100413282 (SF3B3)
Spliceosome [BR:
cjc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
100413282 (SF3B3)
Complex B
100413282 (SF3B3)
Complex C
U2 SnRNP specific factors
100413282 (SF3B3)
Chromosome and associated proteins [BR:
cjc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
100413282 (SF3B3)
TFTC complex
100413282 (SF3B3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
100413282
NCBI-ProteinID:
XP_002761182
Ensembl:
ENSCJAG00000014773
UniProt:
U3CQS7
LinkDB
All DBs
Position
20:complement(27992341..28040140)
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG
EDWYVLVGVAKDLILNPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgttcctgtacaacttaaccttgcagcgagccactggcatcagctttgccattcatggc
aacttttctggaaccaaacaacaagaaattgttgtttcccgtgggaagatcttggagctg
cttcgcccagaccccaacactggcaaagtacataccctgctcactgtggaagtatttggt
gttatccggtcactcatggcctttaggctgacaggtggcaccaaagactacattgtagtt
ggcagtgactctggtcgaattgttatcttggaataccagccatctaagaatatgtttgag
aagattcatcaagaaacctttggcaagagtggctgccgtcgtattgttcctggccagttc
ttagctgtggatcccaaagggcgagccgttatgattagtgccattgagaaacagaaattg
gtatatatcttgaacagggatgctgcagcccgtcttactatttcatctcccctggaagcc
cacaaagcaaacactttagtatatcacgtagttggagtagatgttggatttgaaaatcca
atgtttgcttgtctggaaatggattatgaggaagcagacaatgatccgacaggggaagca
gcagctaatacccagcagacactcactttttatgagctagaccttggtttaaatcatgtg
gtccgaaaatacagtgaacctttggaggaacatggcaacttccttattacagttcccgga
gggtcagatggtccaagtggagtactgatctgctctgaaaactatattacttacaagaac
tttggtgaccagccagatattcgctgtccaattcccaggaggcggaatgacctggatgac
cctgaaagaggaatgatttttgtctgctctgcaacccataagaccaaatcgatgttcttc
tttttggctcaaactgaacagggagatatctttaagatcactttggagacagatgaagat
atggttactgaaatccggctcaagtattttgatactgttcctgttgctgctgccatgtgt
gtacttaaaacaggattcctttttgtagcatcagaatttggaaaccattacttatatcaa
attgcacatcttggagatgatgatgaagaacctgagttttcatcagccatgcctctggaa
gaaggagacacattcttttttcagccaagaccacttaaaaaccttgtgctggttgatgag
ttggacagcctctctcccattctgttttgccagatagctgatctagccaatgaagatact
ccacagctgtatgtggcctgtggtaggggaccccgatcatctctgagagtcctgaggcat
ggacttgaggtgtcagaaatggctgtttctgagctacccggtaaccccaatgctgtctgg
acagtgcgtcgacacattgaagatgagtttgatgcctacatcattgtgtctttcgtgaat
gctaccctggtgttgtccattggagagactgtagaagaagtgactgactctgggttcttg
gggaccaccccaaccttgtcctgctcgttgttaggagatgatgccttggtgcaggtctat
ccagatggcattcggcacatacgagcagacaaaagagtcaatgagtggaagacccctgga
aagaaaacaattgtgaagtgtgcagtgaaccagcgacaagtggtgattgccctgacggga
ggagagctggtctatttcgagatggatccctcaggacagctcaatgaatacacagaacgg
aaggagatgtcagcagatgtggtttgcatgagtctggccaatgtaccccctggagagcag
cggtctcgcttcctcgccgtggggcttgttgacaacactgtcagaattatctccctggac
ccctcagactgtttgcaacctttaagcatgcaggctctcccagcccagcctgagtccttg
tgtatcgtggaaatgggtgggactgagaagcaggatgaactgggtgagaggggctcgatt
ggcttcctatacctgaatattgggctacagaacggtgtgttgctgaggactgtcctggac
cctgtcactggagatttgtctgacactcgcactcggtacctgggttcccgtcccgtgaag
ctcttccgagtccgaatgcaaggccaggaggctgtattggccatgtcaagccgctcatgg
ctgagctattcttaccaatctcgcttccatctcacccccttgtcttatgagacactggaa
tttgcgtcgggctttgcctcggaacagtgtcctgagggcattgtggccatctccaccaac
accctgcggattttggcattagagaagctcggtgctgtcttcaatcaagtagccttccca
ctgcagtacacacccaggaaatttgtcatccatcctgagagtaacaatcttattatcatt
gaaacggaccacaatgcctacactgaggccacaaaagctcagagaaagcagcagatggca
gaggaaatggtggaagcagcaggggaggatgagcgggagctggctgcagagatggcagca
gcattcctcaacgaaaacctccctgagtccatcttcggcgctcccaaggctggcaatggg
cagtgggcctctgtgatccgggtgatgaatcccattcaggggaacacactggaccttgtc
cagctggaacagaatgaggcagcttttagtgtggctgtgtgcaggttttccaacactggt
gaagactggtatgtgctggttggtgtggccaaggacctgatactgaacccccgatctgtg
gcagggggctttgtctatacttacaagcttgtgaacaatggggaaaaactggagtttttg
cacaagactccagtggaagaggtccctgctgccattgccccattccaggggagggtgttg
attggtgtggggaagctgttgcgtgtctatgacctgggaaagaagaagttactccgaaag
tgtgagaataagcatattgccaattatatctctgggatccagactattggacatagggta
attgtatctgacgtccaagaaagttttatctgggttcgctacaagcgtaatgaaaaccag
cttatcatctttgctgatgacacctacccccgatgggtcactacagccagcctcctggac
tatgacactgtggctggggcagacaagtttggcaacatatgtgtggtgaggctcccacct
aacaccaacgatgaagtggatgaagaccctacaggaaacaaagccctgtgggaccgtggt
ttgctcaacggggcctcccagaaggcagaggtgattatgaactaccatgtcggggagaca
gtactgtccttacagaagaccacgctgatccctggaggctcagaatcacttgtctatacc
accttgtcaggaggaattggcatccttgtgccattcacgtcccatgaggaccatgacttc
ttccagcatgtggaaatgcacctgcgatctgaacatccccctctctgtgggcgggaccac
ctcagctttcgttcctactacttccctgtgaagaatgtgattgatggagacctctgtgag
cagttcaattccatggaacccaacaaacaaaagaacgtctctgaagaactggaccgaacc
ccacctgaggtgtccaagaaactcgaggatatccggacccgctatgccttctga
DBGET
integrated database retrieval system
