Callithrix jacchus (white-tufted-ear marmoset): 100413504
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Entry
100413504 CDS
T03264
Symbol
SEMA5B
Name
(RefSeq) semaphorin-5B isoform X1
KO
K06841
semaphorin 5
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04360
Axon guidance
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
100413504 (SEMA5B)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sema
TSP_1
TSP1_2
TSP1_spondin
PSI
TSP1_ADAMTS
TSP1_CFP_C
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
100413504
NCBI-ProteinID:
XP_035129911
UniProt:
F7IL01
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All DBs
Position
15:74013991..74134400
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AA seq
1093 aa
AA seq
DB search
MVVAGPLAVSLLLPSLTLLVFHLSSSQDVSSEPSSEQQLCALSEHPTVAFEDLQPWVSNF
TYAGAWDFSQIALDPSRNQLIVGARNYLFRLSLANVSLLQATEWASSEDTRRSCQSKGKT
EEECQNYVRVLIVAGRKVFMCGTNAFSPVCTSRQVGNLSRMIEKINGVARCPYDPRHNST
AVISSQGELYAATVIDFSGRDPAIYRSLGSGPPLRTAQYNSKWLNEPNFVAAYDIGLFAY
FFLRENAVEHDCGRTVYSRVARVCKNDVGGRFLLEDTWTTFMKARLNCSRPGEVPFYYNE
LQSAFHLPEQDLIYGVFTTNVNSIAASAVCAFNLSAISQAFNGPFRYQENPRAAWLPIAN
PIPNFQCGTLPETGPNENLTERSLQDAQRLFLMSEAVQPVTPEPCVTQDSVRFSHLVVDL
VQAKDTLYHVLYIGTESGTILKALSTASRNLRGCYLEELHVLPPGRREPLRSLRILHSAR
ALFVGLSDGVLRVPLERCAAYRSQGACLGARDPYCGWDGKQQRCSTLEDSSNMSLWIQNI
TTCPVRNVTRDGGFGPWSPWQPCEHLDGDNSGSCLCRARSCDSPRPRCGGLDCVGPAIHI
ANCSRNGAWTPWSSWALCSTSCGIGFQVRQRSCSNPAPRHGGRICVGKSREERFCNENTP
CPLPIFWASWGSWSKCSSNCGGGVQSRRRACENGNSCLGCGVEFKTCNPEGCPEVRRNTP
WTPWLPVNVTQGGARQEQRFRFTCRASLADPHGLQFGRRRTETRTCPADGSGACDTDALV
GDLLRSGSNSPHTVSGGWAAWGPWSSCSRDCELGFRVRKRTCTNPEPRNGGLPCVGDAAE
YQDCNPQACPVRGAWSCWTSWSPCSASCGGGHYQRTRSCTSPAPSPGEDICLGLHTEEAL
CATQACPEGWSPWSEWSACTEDGAQSRSRHCEELLPGPNTCAGNSSQSRPCPFSEIPVIL
PASSMEEATSCAGFNLIHLVATGISCFLGSGLLTLAVYLSCQHCQRQSQESTLVHPATPN
HLQYKGGGTPKNEKYTPMEFKTLNKNNLIPDDRANFYPLQQTNVYTTTYYPSPLNKHSFR
PEASPGQRCFPNS
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atggtggtcgcaggccccctggctgtctcgctgttgctgcccagcctcacgctgctggtg
ttccacctctccagctcccaggacgtctccagtgagcccagcagtgagcagcagctgtgc
gccctgagcgagcatcccaccgtggcctttgaagatctgcagccatgggtctctaatttc
acctacgctggagcctgggatttctcccagatcgccctggacccctccaggaaccagctc
atcgtgggagccaggaactacctcttcagactcagccttgccaatgtctctcttcttcag
gccacagagtgggcctccagcgaggacacgcgacgctcctgccaaagcaaagggaagact
gaggaggagtgtcagaactacgtgcgagtcctgatagtcgccggccggaaggtgttcatg
tgtgggaccaatgccttttcccccgtgtgcaccagcagacaggtggggaacctcagccgg
atgattgagaagatcaatggtgtggcccgctgcccgtacgacccacgccacaactccaca
gctgtcatctcctcccagggggagctctacgcggccacggtcatagacttctcaggtcgg
gaccctgccatctaccgcagcctgggcagcgggccaccacttcgcactgcccagtataac
tccaagtggctcaatgagccaaacttcgtggcagcctatgatattgggctgtttgcatac
ttcttcctgcgggagaacgcagtggagcatgactgtggacgcaccgtgtactctcgtgtg
gcccgcgtgtgcaagaatgatgtgggaggccgattcctgctggaggacacatggaccaca
ttcatgaaggcccggctcaactgctcccgtccaggcgaggtccccttctactataatgag
ctgcagagtgccttccacttgccggagcaggacctcatctacggagttttcaccaccaac
gtaaacagcatcgcggcatctgctgtctgcgccttcaatctcagtgccatctcccaggct
ttcaatggcccgtttcgctaccaggagaatcccagggctgcctggcttcccatcgccaac
cccatccccaatttccagtgtggcaccctgcctgagaccggtcccaacgagaacctgacg
gagcgcagcctgcaggacgcgcagcgcctcttcctgatgagcgaggccgtgcagccggtg
acacccgagccctgtgtcacccaggacagcgtacgcttctcacacctcgtggtggaccta
gtgcaggccaaggacacgctctaccacgtgctctacattggcaccgagtcgggcaccatc
ctgaaggcgctgtccacggcaagccgcaatctccgcggctgctacctggaagagctgcac
gtgctaccccccggacgccgcgagcccctgcgcagcttgcgcatcctgcacagcgcccgc
gcgctcttcgtggggctgagcgacggcgtcctgcgagtcccactggagaggtgcgccgcc
taccgcagccagggggcatgcctgggggcccgggacccgtactgtggctgggacgggaag
cagcaacgttgcagcacgctcgaggacagctccaacatgagcctctggatccagaacatc
accacctgccctgtgcgaaacgtgacacgggatgggggctttggcccatggtcaccatgg
caaccgtgtgaacacttagatggggacaactcaggctcttgcctgtgtcgagcccgatcc
tgtgactcgcctcgaccccgctgtgggggccttgactgcgtggggccagccatccacatt
gccaactgctccaggaatggggcgtggaccccgtggtcatcgtgggcgctgtgcagcacg
tcctgtggcatcggcttccaggtccgccagcgaagttgcagcaaccctgctccccgccac
gggggccgcatctgcgtgggcaagagccgggaggagaggttctgtaacgagaacacacct
tgcccgctgcccatcttctgggcttcctggggctcctggagcaagtgcagcagcaactgt
ggaggcggcgtgcagtcgcggcgtcgggcctgcgaaaacggcaactcctgcctgggctgc
ggtgtggaattcaagacctgcaacccggagggctgccccgaggtgcggcgcaacacgccc
tggacgccgtggctgcctgtgaacgtgacgcagggcggggcgcggcaggagcagaggttc
cgcttcacgtgccgcgcgtccctggccgacccgcacggcctgcagttcggcaggagaagg
accgagacgaggacctgccccgcggacggctccggagcctgtgacaccgatgccctggtg
ggggatctcctgcgcagcgggagcaactctccgcacacggttagcgggggctgggccgcc
tggggaccgtggtcgtcctgctcccgggactgcgagctgggcttccgcgtccgcaagaga
acgtgcacgaacccggagccccgcaacgggggcctgccctgcgtgggcgatgctgccgaa
taccaggactgcaacccccaggcctgcccagttaggggtgcttggtcctgctggacctca
tggtccccatgctccgcttcctgtggtgggggtcactatcaacgcacacgctcttgcacc
agccccgcaccctccccaggtgaggacatctgtctcgggctgcacacggaggaggcactg
tgtgccacacaggcctgtccagaaggctggtcgccctggtctgagtggagtgcgtgcact
gaggacggagcccagagccgaagccgccactgtgaggagctcctcccagggcccaacacc
tgtgctggaaacagcagccagagccgcccctgccctttcagtgagattcctgtcatcctg
ccagcctccagcatggaggaggccaccagctgcgcagggttcaatctcatccacctggtg
gccacgggcatctcctgctttttgggctctgggctcctgaccctggcagtgtacttgtct
tgccagcactgccagcgtcagtcccaggagtccacactggtccatcctgccacccccaac
cacttgcagtacaagggcgggggcaccccgaagaatgaaaagtacacacccatggagttc
aagaccctgaataagaataacttgatccctgatgacagagccaacttctacccattgcag
cagaccaatgtgtacacgactacctactacccaagtcccctgaacaaacacagcttccgg
cccgaggcctcacctggacaacggtgcttccccaacagctga
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