Callithrix jacchus (white-tufted-ear marmoset): 100414028
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Entry
100414028 CDS
T03264
Symbol
HDAC6
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04613
Neutrophil extracellular trap formation
cjc05014
Amyotrophic lateral sclerosis
cjc05034
Alcoholism
cjc05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
100414028 (HDAC6)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
100414028 (HDAC6)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
100414028 (HDAC6)
09165 Substance dependence
05034 Alcoholism
100414028 (HDAC6)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cjc01009
]
100414028 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjc03019
]
100414028 (HDAC6)
04131 Membrane trafficking [BR:
cjc04131
]
100414028 (HDAC6)
03036 Chromosome and associated proteins [BR:
cjc03036
]
100414028 (HDAC6)
Enzymes [BR:
cjc01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
100414028 (HDAC6)
Protein phosphatases and associated proteins [BR:
cjc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100414028 (HDAC6)
Messenger RNA biogenesis [BR:
cjc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
100414028 (HDAC6)
Membrane trafficking [BR:
cjc04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
100414028 (HDAC6)
Chromosome and associated proteins [BR:
cjc03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
100414028 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
100414028
NCBI-ProteinID:
XP_054107534
Ensembl:
ENSCJAG00000002395
LinkDB
All DBs
Position
X:47788220..47812001
Genome browser
AA seq
1254 aa
AA seq
DB search
MEKKGPDTRVPTGRQELGGASQGRSLRKGLRPNRDRGKASSAMTSTGQDSTTTRQRRSRQ
NPQSSPQDSSVTSKRNIKKGAVPRSIPNLAEVKKKGKMKKLGQAIEEDLIVGLQGMDLNL
EAEALAGTGLVLDEQLNEFHCLWDDSFPEGPERLHAIKEQLIQEGLLDRCVSFQARFAEK
EELMLVHSLEYIDLMETTQYMKEGELRVLADTYDSVYLHPNSYSCACLATGSVLRLVDAV
LGAEIRNGMAIPRPPGHHAQHSLMDGYCMFNTWLWQARYAQQKHRIQRVLIVDWDVHHGQ
GTQFTFDQDPSVLYFSIHRYEQGRFWPHLKASNWSTIGFGQGQGYTINVPWNQVGMRDAD
YIAAFLHVLLPVTLEFQPQLVVVAAGFDALQGDPKGEMAATPAGFAQLTHLLMGLAGGKL
ILSLEGGYNLRALAEGVSASLHTLLGDPCPMLESPGAPCRSAQASVSCALEALEPFWEVL
VRSTDTVEGDNVEEDNIEESEDERPWEXPVLPILTWPVLQSRTGLVYDQSMMNHCNLWDS
HHPEVPQRILRIMCRLEELGLAGRCLTLPPRPATEAELFTCHSAEYVARLRATEKMKTRE
LHRESSNFDSIYICPSTFACAQLATGAACRLVEAVLSGEVLNGAAVVRPPGHHAEQDAAC
GFCFFNSVAVAARHAQAISGHALRILIVDWDVHHGNGTQHMFEDDPSVLYVSLHRYDHGT
FFPMGDEGASSQIGRAAGTGFTVNVAWNGPRIGDADYLAAWHRLVLPIAYEFNPELVLVS
AGFDAARGDPLGGCQISPEGYAHLTHLLMGLASGRIILILEGGYNLTSISESMAACTRSL
LGDPPPLLTLPRPPLSGALASITETIQVHRRYWRSLRVMKVEDKEGPSSSKLITKKAPQP
AKPMLAERMITREKKVLEASMGKVISVSGEESTPDQVKSETAVVAVTQDQSSKAATGGAT
LAQTVSKAATGGAMLGQTISEEAVGGATQDQTTSEETVGGATLDQTTSEDAVRGATLGQT
TSEAVGASLAQTTSEAAMEGATLDQTTSEEALGGTELIQTPLTLSTDHQTPPTSPVRGTT
PQISPSTLIGSLRTLELGSESQGALESQAPGEENLLGEAAGGQDMADSMLMQESKGLTDQ
AIFYAVTPLPWCPHLVAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINAHM
LRHHGNSGHPLVLSYVDLSTWCYYCQAYVHHQALLDVKNIAHQNKFGEDIPHPS
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagaaaggcccggacactcgcgtccccacgggtcgccaggaacttggcggagcg
agccaagggcggagtttgagaaaggggttgcgcccgaaccgagacaggggcaaagcctcc
tcagctatgacctcaaccggccaggattccaccacaaccaggcagcgaagaagtaggcag
aacccccagtcgtctcctcaggactccagtgtcacatcgaagcgaaacattaaaaaggga
gccgttccccgctccatccccaatctagcggaggtaaagaagaaaggcaaaatgaagaag
ctcggccaagcaatcgaagaagacctaatcgtgggactgcaggggatggatctgaacctt
gaggctgaagcactggctggcactggcttggtgttggatgagcagctaaacgaattccat
tgcctctgggatgacagcttcccggaaggccctgagcggctccatgccatcaaggagcaa
ctgatccaagagggcctcctagatcgctgtgtgtcctttcaggccaggtttgctgaaaag
gaagagctgatgttggttcacagcctagaatatattgatctgatggaaacaacccagtac
atgaaggagggagaactccgcgtcctagcagacacctatgactcagtttatcttcatccg
aactcatactcctgtgcctgcctggccactggttctgtcctcaggctggtggatgcggtc
ctaggggctgaaatccggaatggcatggccattcccaggcctcctggacatcatgcccaa
cacagtcttatggatggctattgcatgttcaacacgtggctgtggcaagcccgctatgct
caacagaaacaccgcatccagagggtccttatcgtggattgggatgtgcatcatggtcaa
ggaacacagttcaccttcgaccaggaccccagtgtcctctatttctccatccaccgctac
gagcagggtaggttctggccccacctgaaggcctctaactggtccaccataggttttggc
caaggccaaggatataccatcaatgtgccttggaaccaggtggggatgcgggatgctgac
tacattgctgctttcctacacgtcctgctgccagtcacccttgagttccagcctcagctg
gtcgtggtggctgctggatttgatgccctgcaaggggaccccaagggtgagatggccgcc
actccagcagggttcgcccagctaacccacctgctcatgggtctggcaggaggcaagctg
atcctgtctctggagggtggctacaacctccgcgccctggctgaaggcgtcagtgcttcg
cttcacacccttctgggagatccttgccccatgctggagtcccctggtgccccctgtcgg
agtgcccaggcttcagtctcctgtgctctggaagcccttgagcccttctgggaggttctt
gtgagatcaactgatactgtggaaggggacaacgtggaggaggacaatatagaggagagc
gaggatgaaagaccctgggagnccccagtgcttccaatcctgacatggccggtgctacag
tctcgcacagggctggtctatgaccaaagtatgatgaatcactgcaacttgtgggacagc
caccaccctgaggtaccccagcgcatcttgcgaatcatgtgccgtctggaggagctggga
cttgctgggcgctgcctcaccctgccaccgcgccccgccacagaggctgagctgttcacc
tgccacagtgctgagtatgtagctcgtctccgggccacagagaagatgaaaacccgggag
ctgcaccgggagagttccaactttgactccatctacatctgccccagcacctttgcctgt
gcacagcttgccactggcgctgcctgccgcctggtggaggctgtgctctcaggagaggtt
ctgaatggtgctgctgtggtgcgtcccccaggacaccatgcggagcaggacgcagcttgc
ggtttttgctttttcaactctgtggctgtggctgctcgccatgcccaggctatcagtggg
catgccctgcggatcctgatcgtggattgggatgtccaccatggtaatggaactcagcac
atgtttgaggatgaccccagtgtactctatgtgtccctgcaccgctacgatcatggcacc
ttcttccccatgggagatgagggtgccagcagccagatcggccgggctgcaggcacaggc
ttcaccgtcaacgtggcatggaatgggccccgcataggtgatgctgactacctagctgcc
tggcatcgcctggtgcttcctattgcctacgagtttaatccagaactggtgctggtctca
gctggctttgacgctgcacggggggacccgctggggggctgccagatatcacctgagggt
tatgcccacctcacccacctgctgatgggccttgccagtggccgcattatccttatccta
gagggtggctataacctgacatccatctcagagtccatggctgcctgtactcgctccctc
cttggagacccgccacccctgctgaccctgccacggcccccactctcaggggccctggcc
tcaatcactgagaccatccaagtccatcgcagatactggcgcagcttacgggtcatgaag
gtagaagacaaagaaggaccctccagttcgaagctgatcaccaagaaggcaccccaacca
gccaaacctatgttagctgagcggatgatcacacgagaaaagaaggttctggaagcaagc
atggggaaggtcatctcggtgtctggggaagagtccactccagaccaggttaagtcagag
acagctgtggtggcagtcactcaggaccagtcctcaaaggcagccacggggggagccaca
ctggcccagaccgtctccaaggcagccactgggggagccatgctgggccagaccatctca
gaggaggctgtcgggggagccactcaggaccagaccacctcagaggaaactgtgggagga
gccactctggaccagaccacctcagaggatgctgttaggggagccactctaggccagact
acctcagaggctgtaggagcctcactggcccagaccacctcagaggcagccatggaggga
gccacactggaccagactacgtcagaggaagctctagggggcaccgagctgatccaaact
cctctaaccttgagcacagaccaccagacccccccaacctcacctgtgcggggaactaca
ccccagatatctcccagtacattgattgggagtctcaggaccttggagctaggcagcgaa
tctcagggggccctagaatctcaagccccaggagaggagaacctactaggagaggcagct
ggaggtcaggacatggctgattcgatgctgatgcaagaatctaagggcctcactgatcag
gccatattttatgctgtgacaccactgccctggtgtccccatttggtggcagtatgcccc
atacctgcagcaggcctggatgtgacccaaccttgtggggactgtggaacaatccaagag
aattgggtgtgtctctcttgctatcaggtctactgtggtcgttatatcaatgcccacatg
ctccgacaccatggaaattctggacacccgctggtcctcagctacgttgacctgtcgacc
tggtgttactactgccaggcctatgtccaccaccaggctctcctagatgtgaagaacatc
gcccaccagaacaagtttggggaggatattccccacccatcctaa
DBGET
integrated database retrieval system
