Callithrix jacchus (white-tufted-ear marmoset): 100414274
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Entry
100414274 CDS
T03264
Symbol
EIF4A3
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03013
Nucleocytoplasmic transport
cjc03015
mRNA surveillance pathway
cjc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100414274 (EIF4A3)
09122 Translation
03013 Nucleocytoplasmic transport
100414274 (EIF4A3)
03015 mRNA surveillance pathway
100414274 (EIF4A3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjc03019
]
100414274 (EIF4A3)
03041 Spliceosome [BR:
cjc03041
]
100414274 (EIF4A3)
03009 Ribosome biogenesis [BR:
cjc03009
]
100414274 (EIF4A3)
03012 Translation factors [BR:
cjc03012
]
100414274 (EIF4A3)
Enzymes [BR:
cjc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100414274 (EIF4A3)
Messenger RNA biogenesis [BR:
cjc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100414274 (EIF4A3)
mRNA cycle factors
Stress granule specific factors
100414274 (EIF4A3)
Spliceosome [BR:
cjc03041
]
Complex C
Other components
EJC/TREX
100414274 (EIF4A3)
Ribosome biogenesis [BR:
cjc03009
]
Eukaryotic type
90S particles
Helicases
100414274 (EIF4A3)
Translation factors [BR:
cjc03012
]
Eukaryotic type
Initiation factors
eIF-4
100414274 (EIF4A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
100414274
NCBI-ProteinID:
XP_035157875
UniProt:
U3CBY4
LinkDB
All DBs
Position
5:complement(131970827..131986172)
Genome browser
AA seq
411 aa
AA seq
DB search
MAATATMATSGSARKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEK
PSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAV
QIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRA
IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRIL
VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA
NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNREL
YIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggcggccacggccacgatggcgacctctggatcggcgcggaagcggctgctcaaagag
gaagacatgaccaaagtggaattcgagaccagcgaggaggtggacgtgacccccacgttc
gacaccatgggcctgcgggaggacctactgcggggcatctacgcgtacggttttgaaaaa
ccatcagcgatccagcaacgagcaattaagcagataatcaaagggagagacgtcatcgca
cagtctcagtccggcacaggcaaaacagccaccttcagtatctcagtcctccagtgtttg
gatattcaggttcgtgaaactcaagctttgatcttggctcccacgagagagttagctgtg
cagattcagaagggcctgcttgctctcggtgactacatgaatgtccagtgccacgcctgc
attgggggcaccaatgttggggaggacatcagaaagctggattatggacagcatgttgtt
gcgggcactccagggcgtgtgtttgatatgattcgtcgcagaagcttgaggacacgtgct
atcaaaatgttggttttggatgaagctgatgaaatgttgaataaaggtttcaaagagcag
atttacgacgtgtacaggtacctgcctccagccacacaggtggtgctcatcagtgccacg
ctgccacacgagattctggagatgacaaacaagttcatgaccgacccaatccgcatcttg
gtgaaacgtgatgaattgactctggaaggcatcaagcagtttttcgtggcagtggagaga
gaagagtggaaatttgatactctgtgtgacctttatgacacactgaccatcactcaggcg
gtcatcttctgcaacaccaaaaggaaggtggactggctgacggagaaaatgagagaagcc
aacttcaccgtgtcctcgatgcatggagacatgccccagaaagagcgggagtccatcatg
aaggagttccggtcaggcgccagccgagtgctcatttctacagacgtctgggccaggggg
ttggatgtccctcaggtgtctctcatcattaactacgatctgcccaataacagagaattg
tatatacacagaattgggagatcaggtcggtatggccggaagggtgtggccattaacttt
gtgaagaatgacgacattcgcatcctcagagacatcgagcagtactattccactcagatc
gatgagatgcctatgaacgttgctgatctgatctga
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