Callithrix jacchus (white-tufted-ear marmoset): 100414601
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Entry
100414601 CDS
T03264
Symbol
SCN5A
Name
(RefSeq) sodium channel protein type 5 subunit alpha isoform X2
KO
K04838
voltage-gated sodium channel type V alpha
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04261
Adrenergic signaling in cardiomyocytes
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09150 Organismal Systems
09153 Circulatory system
04261 Adrenergic signaling in cardiomyocytes
100414601 (SCN5A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cjc04040
]
100414601 (SCN5A)
Ion channels [BR:
cjc04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
100414601 (SCN5A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
GPHH
IQ
Motif
Other DBs
NCBI-GeneID:
100414601
NCBI-ProteinID:
XP_035133635
Ensembl:
ENSCJAG00000009878
UniProt:
F7GVT5
LinkDB
All DBs
Position
17:complement(69482123..69585753)
Genome browser
AA seq
2016 aa
AA seq
DB search
MANLLLPRGTSSFRRFTRESLAAIEKRMAEKQARSSAASQESREGLPEEEAPRPQLDLQA
SKKLPDLYGNPPRELIGEPLEDLDPFYSTQKTFIVLNKGKTIFRFSATNALYILSPFHPI
RRAAVKILVHSLFSMLIMCTILTNCVFMAQHDPPPWTKYVEYTFTAIYTFESLVKILARG
FCLHAFTFLRDPWNWLDFSVIVMAYTTEFVDLGNVSALRTFRVLRALKTISVISGLKTIV
GALIQSVKKLADVMVLTVFCLSVFALIGLQLFMGNLRHKCVRNFTALNGTNGSVEADGSV
WESLDLYLSDPENYLLKNGTSDVLLCGNSSDAGTCPEGYRCLKAGENPDHGYTSFDSFAW
AFLALFRLMTQDCWERLYQQTLRSAGKIYMIFFMLVIFLGSFYLVNLILAVVAMAYEEQN
QATIAETEEKEKRFQEAMEMLKKEHEALTIRGVDTVSRSSLEMSPLAPVTIHERRSKRRK
RMSSGTEECGEDRLPKSDSEDGPRAVNRLSLTHGLSRTSMKPRSSRGSIFTFRRRDLGSE
TDFADDENSTAGESESHHTSLLVPWPLRRTGAQGQPSPGTAAPGHALNGKKNSTVDCNGV
VSLLGAGDPEATSPGSHLLRPVMLEHPLDTTTPSEEPGGPRMLTPQAPCVDGFEEPEARQ
RALSAVSVLTSALEELEESQRKCPPCWNRFAQRFLIWECCPLWISVKQGVKFVVTDPFAD
LTITMCIVLNTLFMALEHYNMTSEFEDMLQVGNLVFTGIFTAEMTFKIIALDPYYYFQQG
WNIFDSIIVVLSLMELGLSRMSNLSVLRSFRLLRVFKLAKSWPTLNTLIKIIGNSVGALG
NLTLVLAIIVFIFAVVGMQLFGKNYSELRHSDSGLLPRWHMMDFFHAFLIIFRILCGEWI
ETMWDCMEVSGQSLCLLVFLLVMVIGNLVVLNLFLALLLSSFSADNLTAPDEDRELNNLQ
LALARIQRGLRFIKWTTWDFCCGLLRQRPQKPAALAAPGQLPSCIATPHSPPPPETEKAP
PARKETRFEEGEQLGQGTPGDPETVCVPIAVAESDTDDQEEDEENSLGPEEESCKQQESQ
PVSDGPEAPPDSRTWSQVSATTSSEAEASASQADWQQQRKVEPRAPGCSETPEDSYSEGS
TADMTNTAELLEQIPDLGQDVKDPEDCFTEGCVRRCPCCAVDTTQAPGKVWWQLRKTCYR
IVEHSWFETFIIFMILLSSGALAFEDIYLEERKTIKVLLEYADKMFTYVFVLEMLLKWVA
YGFKKYFTNAWCWLDFLIVDVSLVSLVANTLGFAEMGPIKSLRTLRALRPLRALSRFEGM
RVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFGRCINQTEGDLPLNYTIVNN
KSQCESLNMTGELYWTKVKVNFDNVGAGYLALLQVATFKGWMDIMYAAVDSRGYEEQPQW
EYNLYMYIYFVVFIIFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKK
LGSKKPQKPIPRPLNKYQGFIFDVVTKQAFDVTIMFLICLNMVTMMVETDDQSPEKVNIL
TKINLLFVAIFTGECIFKMAALRHYYFTNSWNIFDFVVVILSIVGTVLSDIIQKYFFSPT
LFRVIRLARIGRILRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMANFA
YVKWEAGIDDMFNFQTFANSMLCLFQITTSAGWDGLLSPILNTGPPYCDPNLPNSNGSRG
DCGSPAVGILFFTTYIIISFLIVVNMYIAIILENFSVATEESTEPLSEDDFDMFYETWEK
FDPEATQFIEYSALSDFADALSEPLRIAKPNQISLINMDLPMVSGDRIHCMDILFAFTKR
VLGESGEMDALKIQMEEKFMAANPSKISYEPITTTLRRKHEEVSATVIQRAFRRHLLQRS
MKHASFLFRQQAGSGLSEEDAPEREGLIAYMMNENFSRPPGLPSSSSISSTSFPPSYDSV
TRATSDNLQVRGSDDSHSEDLADFPPSLDRDRESIV
NT seq
6051 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacctcctattacctcggggcaccagcagcttccgcagattcacacgggagtcc
ctggcagccatcgagaagcgaatggcggagaagcaagcccgcagctcggctgcctcacag
gagagccgagaggggctgccggaggaggaggctccccggccccagctggacctgcaggcc
tccaaaaaactgccagatctttatggcaatccaccccgagagctcatcggggagcccctg
gaggacctggaccccttctatagcacccaaaagactttcatcgtactgaataaaggcaag
accatcttccggttcagtgccaccaacgccttgtacatcctcagtcccttccaccccatc
cggagagcagctgtgaagattctggttcactcgctcttcagcatgctcatcatgtgcacc
atcctcaccaactgcgtgttcatggcccagcatgaccctccaccctggaccaagtatgtc
gagtacaccttcaccgccatttacacctttgagtctctggtcaagatcctggctcgaggc
ttctgcctgcatgcattcaccttccttcgggacccatggaactggctggacttcagtgtg
attgtcatggcatacacaactgaatttgtggacctgggcaatgtctcagccttacgcacc
ttccgagtcctccgggccctgaaaactatatcagtcatttcaggcctgaagaccattgtg
ggggccctgatccagtccgtgaagaagctggctgatgtgatggtcctcacggtcttctgc
ctcagcgtcttcgccctcatcggcctgcagctcttcatgggcaacctaaggcacaagtgc
gtccgcaacttcaccgcgcttaatggcaccaacggctccgtggaggccgatggctcggtc
tgggaatccctggacctctacctcagtgacccagaaaattacctgctcaagaacggcacc
tccgacgtgttgctgtgtgggaacagctctgacgccgggacgtgtcctgagggctaccgg
tgcctaaaggcaggcgagaaccctgaccatggctacaccagcttcgattcctttgcctgg
gcctttcttgcgctcttccgcctgatgacgcaggactgctgggagcgcctctatcagcag
accctcaggtccgcagggaagatctacatgatcttcttcatgcttgtcatctttctgggc
tccttctacctggtgaacctgatcctggccgtggttgccatggcctatgaggagcaaaac
caagccaccatcgctgagaccgaggaaaaggaaaagcgcttccaggaggccatggagatg
ctcaagaaagaacacgaggccctcaccatcaggggtgtggacaccgtgtcccgtagctcc
ttggagatgtcccctttggccccagtaaccatccatgaaagaagaagcaagaggagaaaa
cggatgtcttcaggaactgaggagtgtggggaggacaggctgcccaagtctgactcagaa
gatggtcccagagcagtgaatcgtctcagcctcacccacggcctcagcaggacgtctatg
aagccacgttccagccgcgggagcattttcacctttcgccggcgagatctaggctccgaa
acagattttgcagatgatgaaaacagcacagcgggggagagcgagagccaccacacatca
ctgctggtgccctggcccctgcgccggactggtgcccagggacagcccagtcctggaaca
gcagctcctggccacgccctcaatggcaaaaagaacagcactgtggactgcaacggggtg
gtctccttgctgggggcaggtgacccagaggccacatccccaggaagccatctcctccgc
cctgtgatgctagagcaccccctagacacgaccacgccatcggaggagccaggcgggccc
cggatgctgacccctcaggctccgtgtgtagatggcttcgaggagccagaagcacggcag
cgggccctcagcgcagtcagtgtcctcaccagcgcactggaagagctggaggagtctcag
cgcaagtgtccgccgtgctggaaccgcttcgcccagcgcttcctgatctgggagtgctgc
ccgctgtggatatccgtcaagcagggagtgaagttcgtggtcacggacccgttcgccgac
ctcaccatcaccatgtgcatcgtgctcaacacactcttcatggcgctggagcactacaac
atgacgagtgaattcgaggacatgctgcaggtcggaaacctggtcttcacggggattttc
acagcagagatgaccttcaagatcatcgccctcgacccctactactacttccagcagggc
tggaacatcttcgacagcatcatcgtcgtccttagcctcatggagctgggcctgtcccgc
atgagcaacttgtcagtgctgcgctccttccgcctgctgcgggtcttcaagctggccaaa
tcctggcccaccctgaacacactcatcaagatcatcgggaactcagtgggggcactgggg
aacctgacgctggtgctagccatcatcgtgttcatctttgctgtggtgggcatgcagctc
tttggcaagaactactcagagctgaggcacagcgactcaggcctactgcctcgctggcac
atgatggatttcttccacgccttcctcatcatcttccgcatcctctgcggagagtggatc
gagaccatgtgggactgcatggaggtgtctgggcagtcattgtgcctgctggtcttcttg
ctcgttatggtcattggaaaccttgtggtcctgaacctcttcctggccttgctgctcagc
tccttcagtgcagacaacctcacagcccctgatgaggatagagagctgaacaacctccag
ctggccctggcccgcatccagcggggcctgcgcttcatcaagtggaccacctgggacttc
tgctgtgggcttctgcggcagcggcctcagaagcccgcagccctggccgccccgggccag
ctgcccagctgcattgccaccccccactccccaccacccccagagacagagaaggcgcct
cccgcccgcaaggaaacacggtttgaggagggcgagcagctgggccagggcacccccgga
gatccagagactgtgtgtgtgcccattgccgtggccgagtcagacacggatgaccaagag
gaggacgaggagaacagcctgggcccggaggaggagtcatgcaagcagcaggaatcccag
cctgtgtccgatggcccagaggcccctccagattccaggacctggagccaagtgtcagcg
accacctcctccgaggcggaggccagtgcatctcaggccgactggcagcagcagcggaaa
gtggaaccccgggccccagggtgcagtgagaccccagaggacagttactccgagggcagc
acagcagacatgaccaacaccgctgagctcctggagcagatccctgacctcggccaggat
gtcaaggatccagaggactgctttaccgaaggctgtgtccggcgctgtccctgctgtgcg
gtggacaccacgcaggccccagggaaggtctggtggcagctgcgcaagacctgctaccgc
attgtggagcacagctggttcgagacattcatcatcttcatgatcctgctcagcagtgga
gcactggccttcgaggacatctacctggaggagcggaagaccatcaaggttctgcttgag
tatgccgacaagatgttcacctacgtcttcgtgctggagatgctgctcaagtgggtggcc
tacggcttcaagaagtacttcaccaatgcctggtgctggctcgacttcctcatcgtggac
gtctctctggtcagcctggtggccaacaccctgggctttgctgagatgggccccatcaag
tcactgcggacgctgcgtgcactccgccccctgagagccctgtcacgatttgagggcatg
agggtggtagtcaatgccctggtgggcgccatcccgtccatcatgaacgtcctcctcgtc
tgcctcatcttctggctcatcttcagcatcatgggcgtgaacctcttcgcggggaagttt
gggaggtgcatcaaccagacggagggagacttgcctttgaactacaccatcgtgaacaac
aagagccagtgtgagtccttgaacatgaccggagagttgtactggaccaaggtgaaagtc
aactttgacaacgtgggggccgggtacctggcccttctgcaggtggcaacatttaaaggc
tggatggacattatgtatgctgctgtggactccagggggtacgaggagcagccccagtgg
gagtacaacctctacatgtacatctactttgtcgttttcatcatcttcggctctttcttc
accctgaacctctttatcggtgtcatcattgacaacttcaaccagcagaagaaaaagtta
ggaggccaggacatcttcatgacagaggagcagaagaagtactacaatgccatgaagaag
ctgggctccaagaagccccagaagcccatcccacggcccctgaacaagtaccagggcttc
atattcgacgttgtgaccaagcaggcctttgatgtcaccatcatgtttctcatctgcttg
aatatggtgaccatgatggtggagaccgatgaccaaagtcctgagaaagtcaacatcttg
accaagatcaacctgctctttgtggccatcttcacaggcgagtgcattttcaagatggct
gccctgcgccactattacttcaccaacagctggaatatcttcgacttcgtggttgtcatc
ctctccatcgtgggcactgtgctctcagacatcatccagaagtacttcttctccccgacg
ctcttccgagtcatccgcctggcccggatcggccgcatcctcagactcatccgaggggcc
aaggggatccgcacgctgctcttcgccctcatgatgtccctgcctgccctcttcaacatc
gggctgctgctcttcctcgtcatgttcatctactccatcttcggcatggccaactttgct
tatgtcaagtgggaggccggcatcgacgacatgttcaacttccagaccttcgccaacagc
atgctgtgcctcttccagatcaccacgtcggccggctgggacggcctcctcagccccatc
ctcaacactgggcccccctactgcgaccccaatctgcccaacagcaacggctctcggggg
gactgcgggagcccagccgtgggcatcctcttcttcaccacctacatcatcatctccttc
ctcatcgtggtcaacatgtacattgccatcatcctggagaacttcagcgtggccacagag
gagagcaccgagcccctgagtgaggacgacttcgacatgttctatgagacctgggagaag
tttgacccagaggccactcagtttatcgagtattcagccctgtctgacttcgccgatgcc
ctgtctgagccactccgtatcgccaagcccaaccagataagcctcatcaatatggacctg
cccatggtgagcggggaccgcatccattgcatggacatcctcttcgccttcaccaaaagg
gtcctgggggagtctggggagatggacgccctgaagatccagatggaggagaagttcatg
gcagccaatccatccaagatctcctacgagcccatcaccaccacactccggcgcaagcac
gaggaggtgtcagccaccgtcatccagagggcctttcgcaggcacctgctgcagcgctcc
atgaagcacgcctccttcctcttccgtcagcaggcgggcagcggcctctccgaagaggac
gcccctgagcgagagggcctcatcgcctacatgatgaatgagaacttctctcggccccct
ggcctgccctccagctcctccatctcctccacttccttcccaccctcctatgacagtgtc
actagagccaccagcgataacctccaggtgcgggggtctgacgacagccacagcgaagat
ctcgccgacttccccccgtctctggacagggaccgtgagtccatcgtctga
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integrated database retrieval system
